OGLUM06G05450 (Oryza glumaepatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OGLUM06G05450 T003272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF003
M06667_2.00 		Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH		 Dap-seq
OMalley et al.(2016)
ESE3_col_a 		0.852 0.961
ERF003
M06668_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
ESE3_colamp_a 		0.852 0.961
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.722 0.804
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM06G05450.1 AP2 53 104

Links

Other AP2 family TFs
Other Oryza glumaepatula TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I
SPL2 Arabidopsis lyrata scaffold_800740.1 N
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I
SPL2 Arabidopsis thaliana AT5G43270 N
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I
Bo2g062840 Brassica oleracea Bo2g062840 I
Bo9g058970 Brassica oleracea Bo9g058970 N
Bo7g065290 Brassica oleracea Bo7g065290 N
Bra038324 Brassica rapa Bra038324 I
Bra027478 Brassica rapa Bra027478 N
Bra033671 Brassica rapa Bra033671 N
PK16953.1 Cannabis sativa PK16953.1 N
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N
Carubv10026434m.g Capsella rubella Carubv10026434m.g N
Carubv10020369m.g Capsella rubella Carubv10020369m.g I
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I
Ca_11356 Cicer arietinum Ca_11356 I
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N
GLYMA11G36980 Glycine max GLYMA11G36980 N
GLYMA18G00903 Glycine max GLYMA18G00903 N
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N
MLOC_62426 Hordeum vulgare MLOC_62426 N
Lus10006411.g Linum usitatissimum Lus10006411.g I
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N
MDP0000155354 Malus domestica MDP0000155354 N
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N
MTR_3g085180 Medicago truncatula MTR_3g085180 N
mgf010397m Mimulus guttatus mgf010397m N
mgf019346m Mimulus guttatus mgf019346m I
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N
Pavir.J20730 Panicum virgatum Pavir.J20730 N
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N
Pm007020 Prunus mume Pm007020 N
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N
29929.m004641 Ricinus communis 29929.m004641 I
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I
Si017749m.g Setaria italica Si017749m.g N
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N
Sb04g004940 Sorghum bicolor Sb04g004940 N
TCM_008772 Theobroma cacao TCM_008772 N
SPL2 Vitis vinifera VIT_11s0065g00170 N
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I
GRMZM2G163813 Zea mays GRMZM2G163813 N
GRMZM2G156621 Zea mays GRMZM2G156621 N
GRMZM2G126827 Zea mays GRMZM2G126827 N