cassava35062.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava35062.m1 T006897_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.807 0.960
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.807 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.804 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.804 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.804 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.804 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.768 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.768 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.768 0.880
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.840
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.732 0.800
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.732 0.800
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.732 0.800
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.732 0.800
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.732 0.800
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.732 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.704 0.760
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.702 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.702 0.900
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.696 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.683 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.683 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava35062.m1 AP2 67 118

Links

Other AP2 family TFs
Other Manihot esculenta TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00064p00107710 Amborella trichopoda AMTR_s00064p00107710 N 0.000
Aquca_020_00467 Aquilegia coerulea Aquca_020_00467 N 0.000
CGA1 Arabidopsis lyrata fgenesh2_kg.7__1630__AT4G26150.1 N 0.000
GNC Arabidopsis lyrata fgenesh2_kg.8__1592__AT5G56860.1 N 0.000
GATA22 Arabidopsis thaliana AT4G26150 N 0.000
GATA21 Arabidopsis thaliana AT5G56860 N 0.000
Bostr.26833s0575 Boechera stricta Bostr.26833s0575 N 0.000
Bostr.7867s0434 Boechera stricta Bostr.7867s0434 N 0.000
BRADI1G37480 Brachypodium distachyon BRADI1G37480 N 0.000
BRADI3G08240 Brachypodium distachyon BRADI3G08240 N 0.000
Bo1g042950 Brassica oleracea Bo1g042950 N 0.000
Bo2g033970 Brassica oleracea Bo2g033970 N 0.000
Bo3g019610 Brassica oleracea Bo3g019610 I 0.000
Bo7g110740 Brassica oleracea Bo7g110740 N 0.000
Bo9g127360 Brassica oleracea Bo9g127360 N 0.000
Bra002788 Brassica rapa Bra002788 N 0.000
Bra006851 Brassica rapa Bra006851 I 0.000
Bra019118 Brassica rapa Bra019118 N 0.000
Bra026461 Brassica rapa Bra026461 N 0.000
Bra035633 Brassica rapa Bra035633 N 0.000
PK07593.1 Cannabis sativa PK07593.1 N 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Cagra.3467s0056 Capsella grandiflora Cagra.3467s0056 N 0.000
Cagra.4138s0005 Capsella grandiflora Cagra.4138s0005 N 0.000
Carubv10005113m.g Capsella rubella Carubv10005113m.g N 0.000
Carubv10026556m.g Capsella rubella Carubv10026556m.g N 0.000
evm.TU.supercontig_93.28 Carica papaya evm.TU.supercontig_93.28 N 0.000
Ciclev10008943m.g Citrus clementina Ciclev10008943m.g N 0.000
Ciclev10008968m.g Citrus clementina Ciclev10008968m.g N 0.000
Ciclev10009004m.g Citrus clementina Ciclev10009004m.g N 0.000
orange1.1g020987m.g Citrus sinensis orange1.1g020987m.g N 0.000
orange1.1g021329m.g Citrus sinensis orange1.1g021329m.g N 0.000
orange1.1g021859m.g Citrus sinensis orange1.1g021859m.g N 0.000
Cucsa.353330 Cucumis sativus Cucsa.353330 N 0.000
Cucsa.397360 Cucumis sativus Cucsa.397360 N 0.000
Eucgr.C03048 Eucalyptus grandis Eucgr.C03048 N 0.000
Eucgr.C03895 Eucalyptus grandis Eucgr.C03895 N 0.000
Thhalv10013793m.g Eutrema salsugineum Thhalv10013793m.g N 0.000
Thhalv10025461m.g Eutrema salsugineum Thhalv10025461m.g N 0.000
gene02686-v1.0-hybrid Fragaria vesca gene02686-v1.0-hybrid N 0.000
gene12624-v1.0-hybrid Fragaria vesca gene12624-v1.0-hybrid N 0.000
GLYMA04G05431 Glycine max GLYMA04G05431 N 0.000
GLYMA13G00200 Glycine max GLYMA13G00200 N 0.000
GLYMA14G10830 Glycine max GLYMA14G10830 N 0.000
GLYMA15G18380 Glycine max GLYMA15G18380 N 0.000
GLYMA17G06290 Glycine max GLYMA17G06290 N 0.000
GLYMA17G34670 Glycine max GLYMA17G34670 N 0.000
Gorai.009G031400 Gossypium raimondii Gorai.009G031400 N 0.000
Gorai.009G045000 Gossypium raimondii Gorai.009G045000 N 0.000
Gorai.010G082800 Gossypium raimondii Gorai.010G082800 N 0.000
Gorai.010G101100 Gossypium raimondii Gorai.010G101100 N 0.000
MLOC_10364 Hordeum vulgare MLOC_10364 N 0.000
MLOC_70809 Hordeum vulgare MLOC_70809 N 0.000
LPERR02G07780 Leersia perrieri LPERR02G07780 N 0.000
LPERR06G15680 Leersia perrieri LPERR06G15680 N 0.000
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.000
chr4.CM0244.740.nd Lotus japonicus chr4.CM0244.740.nd N 0.000
chr5.CM0019.380.nc Lotus japonicus chr5.CM0019.380.nc N 0.000
MDP0000131803 Malus domestica MDP0000131803 N 0.000
MDP0000190038 Malus domestica MDP0000190038 N 0.000
MDP0000237740 Malus domestica MDP0000237740 N 0.000
MDP0000309902 Malus domestica MDP0000309902 I 0.000
MDP0000739900 Malus domestica MDP0000739900 N 0.000
cassava32152.m1 Manihot esculenta cassava32152.m1 N 0.000
cassava33236.m1 Manihot esculenta cassava33236.m1 N 0.000
cassava43851.valid.m1 Manihot esculenta cassava43851.valid.m1 N 0.000
MTR_1g016170 Medicago truncatula MTR_1g016170 N 0.000
MTR_2g038720 Medicago truncatula MTR_2g038720 N 0.000
MTR_4g126350 Medicago truncatula MTR_4g126350 N 0.000
mgf008387m Mimulus guttatus mgf008387m N 0.000
mgf025842m Mimulus guttatus mgf025842m N 0.000
GSMUA_Achr10G27510_001 Musa acuminata GSMUA_Achr10G27510_001 N 0.000
GSMUA_Achr2G16730_001 Musa acuminata GSMUA_Achr2G16730_001 I 0.000
GSMUA_Achr4G30820_001 Musa acuminata GSMUA_Achr4G30820_001 N 0.000
GSMUA_Achr7G09030_001 Musa acuminata GSMUA_Achr7G09030_001 I 0.000
GSMUA_Achr8G24880_001 Musa acuminata GSMUA_Achr8G24880_001 N 0.000
OBART02G08990 Oryza barthii OBART02G08990 N 0.000
OBART06G19060 Oryza barthii OBART06G19060 N 0.000
OB02G18010 Oryza brachyantha OB02G18010 N 0.000
OB06G26630 Oryza brachyantha OB06G26630 N 0.000
ORGLA06G0158200 Oryza glaberrima ORGLA06G0158200 N 0.000
OGLUM02G09200 Oryza glumaepatula OGLUM02G09200 N 0.000
OGLUM06G20240 Oryza glumaepatula OGLUM06G20240 N 0.000
BGIOSGA006859 Oryza indica BGIOSGA006859 N 0.000
BGIOSGA023117 Oryza indica BGIOSGA023117 N 0.000
BGIOSGA023119 Oryza indica BGIOSGA023119 N 0.000
OMERI02G10250 Oryza meridionalis OMERI02G10250 N 0.000
ONIVA06G22870 Oryza nivara ONIVA06G22870 N 0.000
ONIVA11G03260 Oryza nivara ONIVA11G03260 N 0.000
OPUNC02G08040 Oryza punctata OPUNC02G08040 N 0.000
OPUNC06G17260 Oryza punctata OPUNC06G17260 N 0.000
ORUFI02G09020 Oryza rufipogon ORUFI02G09020 N 0.000
ORUFI06G20160 Oryza rufipogon ORUFI06G20160 N 0.000
OS02G0220400 Oryza sativa OS02G0220400 N 0.000
OS06G0571800 Oryza sativa OS06G0571800 N 0.000
Pavir.Aa02907 Panicum virgatum Pavir.Aa02907 N 0.000
Pavir.Ab00790 Panicum virgatum Pavir.Ab00790 N 0.000
Pavir.Da00760 Panicum virgatum Pavir.Da00760 N 0.000
Pavir.Db01250 Panicum virgatum Pavir.Db01250 N 0.000
e_gw1.121.107.1 Physcomitrella patens e_gw1.121.107.1 N 0.000
POPTR_0006s24560 Populus trichocarpa POPTR_0006s24560 N 0.000
POPTR_0018s05160 Populus trichocarpa POPTR_0018s05160 N 0.000
Pm005502 Prunus mume Pm005502 N 0.000
Pm027164 Prunus mume Pm027164 N 0.000
PRUPE_ppa018120mg Prunus persica PRUPE_ppa018120mg N 0.000
PRUPE_ppa024374mg Prunus persica PRUPE_ppa024374mg N 0.000
29794.m003323 Ricinus communis 29794.m003323 N 0.000
29912.m005322 Ricinus communis 29912.m005322 N 0.000
SapurV1A.0086s0290 Salix purpurea SapurV1A.0086s0290 N 0.000
Si006733m.g Setaria italica Si006733m.g N 0.000
Si019058m.g Setaria italica Si019058m.g N 0.000
Solyc07g038160.2 Solanum lycopersicum Solyc07g038160.2 N 0.000
Solyc12g008830.1 Solanum lycopersicum Solyc12g008830.1 N 0.000
PGSC0003DMG400000280 Solanum tuberosum PGSC0003DMG400000280 N 0.000
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.000
PGSC0003DMG400004493 Solanum tuberosum PGSC0003DMG400004493 N 0.000
Sb04g007750 Sorghum bicolor Sb04g007750 N 0.000
Sb10g022580 Sorghum bicolor Sb10g022580 N 0.000
TCM_037285 Theobroma cacao TCM_037285 N 0.000
TCM_037666 Theobroma cacao TCM_037666 N 0.000
Traes_6AS_1BF0823061 Triticum aestivum Traes_6AS_1BF0823061 N 0.000
Traes_6AS_1BF082306 Triticum aestivum Traes_6AS_1BF082306 N 0.000
Traes_6BS_4EA352A7A Triticum aestivum Traes_6BS_4EA352A7A N 0.000
Traes_6DS_77038429A Triticum aestivum Traes_6DS_77038429A N 0.000
Traes_7BL_86BB5C61E Triticum aestivum Traes_7BL_86BB5C61E N 0.000
Traes_7DL_BFADB408C Triticum aestivum Traes_7DL_BFADB408C N 0.000
VIT_04s0008g01290 Vitis vinifera VIT_04s0008g01290 N 0.000
VIT_11s0016g02210 Vitis vinifera VIT_11s0016g02210 N 0.000
GRMZM2G031983 Zea mays GRMZM2G031983 N 0.000
GRMZM2G039586 Zea mays GRMZM2G039586 N 0.000