Pavir.J16149 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J16149 T009579_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93392_TOBAC
M09731_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OPBP1_01 		0.756 0.878
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.749 0.816
ERF15
M00718_2.00 		Arabidopsis thaliana
NGSCGSCB
VGSCGSCN		 PBM
Chang et al.(2013)
pTH7336 		0.700 0.837
ERF15
M06604_2.00 		Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF15_colamp_a 		0.700 0.837
ERF15
M06605_2.00 		Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN		 Dap-seq
OMalley et al.(2016)
ERF15_col 		0.700 0.837
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.692 0.837
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.692 0.837
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.692 0.837
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.692 0.837
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.692 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16149.1.p AP2 92 144

Links

Other AP2 family TFs
Other Panicum virgatum TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00954 Aegilops tauschii F775_00954 I
F775_08967 Aegilops tauschii F775_08967 I
F775_14392 Aegilops tauschii F775_14392 I
F775_23034 Aegilops tauschii F775_23034 I
F775_28392 Aegilops tauschii F775_28392 I
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I
AtMYB81 Arabidopsis lyrata Al_scaffold_0004_975 I
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I
AtMYB81 Arabidopsis thaliana AT2G26960 D
MYB101 Arabidopsis thaliana AT2G32460 D
MYB97 Arabidopsis thaliana AT4G26930 I
ATMYB120 Arabidopsis thaliana AT5G55020 I
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I
Bo3g026690 Brassica oleracea Bo3g026690 I
Bo4g046000 Brassica oleracea Bo4g046000 I
Bo4g076940 Brassica oleracea Bo4g076940 I
Bo4g178040 Brassica oleracea Bo4g178040 I
Bo9g119060 Brassica oleracea Bo9g119060 I
Bra002938 Brassica rapa Bra002938 I
Bra005597 Brassica rapa Bra005597 I
Bra012038 Brassica rapa Bra012038 I
Bra021791 Brassica rapa Bra021791 I
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I
Cagra.9104s0001 Capsella grandiflora Cagra.9104s0001 I
Carubv10025227m.g Capsella rubella Carubv10025227m.g I
Carubv10025403m.g Capsella rubella Carubv10025403m.g I
Carubv10026070m.g Capsella rubella Carubv10026070m.g I
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I
Cla005406 Citrullus lanatus Cla005406 I
Cla007782 Citrullus lanatus Cla007782 I
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I
Cucsa.060080 Cucumis sativus Cucsa.060080 I
Cucsa.148580 Cucumis sativus Cucsa.148580 I
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I
GLYMA04G15150 Glycine max GLYMA04G15150 I
GLYMA06G47000 Glycine max GLYMA06G47000 I
GLYMA08G42920 Glycine max GLYMA08G42920 I
GLYMA08G42955 Glycine max GLYMA08G42955 I
GLYMA13G25716 Glycine max GLYMA13G25716 I
GLYMA13G38521 Glycine max GLYMA13G38521 I
GLYMA15G35860 Glycine max GLYMA15G35860 I
GLYMA18G10921 Glycine max GLYMA18G10921 I
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I
MLOC_6041 Hordeum vulgare MLOC_6041 I
Gam1 Hordeum vulgare Q96464_HORVU D
LPERR03G20110 Leersia perrieri LPERR03G20110 I
LPERR06G17110 Leersia perrieri LPERR06G17110 N
LPERR06G20610 Leersia perrieri LPERR06G20610 I
Lus10021539.g Linum usitatissimum Lus10021539.g I
Lus10026787.g Linum usitatissimum Lus10026787.g I
Lus10027189.g Linum usitatissimum Lus10027189.g I
Lus10035275.g Linum usitatissimum Lus10035275.g I
Lus10036103.g Linum usitatissimum Lus10036103.g I
Lus10040063.g Linum usitatissimum Lus10040063.g I
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I
MDP0000147309 Malus domestica MDP0000147309 I
MDP0000151688 Malus domestica MDP0000151688 I
MDP0000175835 Malus domestica MDP0000175835 I
MDP0000176798 Malus domestica MDP0000176798 I
MDP0000179306 Malus domestica MDP0000179306 I
MDP0000308617 Malus domestica MDP0000308617 I
cassava11031.m1 Manihot esculenta cassava11031.m1 I
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I
cassava40302.m1 Manihot esculenta cassava40302.m1 I
MTR_1g021230 Medicago truncatula MTR_1g021230 I
MTR_8g042410 Medicago truncatula MTR_8g042410 I
mgf002965m Mimulus guttatus mgf002965m I
mgf010934m Mimulus guttatus mgf010934m I
mgf019173m Mimulus guttatus mgf019173m I
mgf020500m Mimulus guttatus mgf020500m I
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I
GSMUA_Achr7G00280_001 Musa acuminata GSMUA_Achr7G00280_001 I
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D
OBART01G34660 Oryza barthii OBART01G34660 I
OBART03G24120 Oryza barthii OBART03G24120 I
OBART06G20450 Oryza barthii OBART06G20450 I
OB01G43550 Oryza brachyantha OB01G43550 I
OB03G32840 Oryza brachyantha OB03G32840 I
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I
GAM1 Oryza indica BGIOSGA004670 I
BGIOSGA020673 Oryza indica BGIOSGA020673 I
OLONG_019401 Oryza longistaminata OLONG_019401 I
OLONG_020610 Oryza longistaminata OLONG_020610 I
OLONG_025057 Oryza longistaminata OLONG_025057 I
OMERI01G31990 Oryza meridionalis OMERI01G31990 I
OMERI03G21920 Oryza meridionalis OMERI03G21920 I
OMERI06G21070 Oryza meridionalis OMERI06G21070 I
OMERI06G24960 Oryza meridionalis OMERI06G24960 I
ONIVA04G15310 Oryza nivara ONIVA04G15310 I
ONIVA06G24230 Oryza nivara ONIVA06G24230 I
ONIVA06G28020 Oryza nivara ONIVA06G28020 I
OPUNC03G22220 Oryza punctata OPUNC03G22220 I
OPUNC06G18670 Oryza punctata OPUNC06G18670 I
OPUNC06G22490 Oryza punctata OPUNC06G22490 I
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I
GAM1_ORYSI Oryza sativa GAM1_ORYSI D
GAMYB Oryza sativa OS01G0812000 I
OS03G0578900 Oryza sativa OS03G0578900 I
OS06G0679400 Oryza sativa OS06G0679400 I
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I
myb.Ph3 Petunia x hybrida Q02994_PETHY D
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I
Pm015094 Prunus mume Pm015094 I
Pm016605 Prunus mume Pm016605 I
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I
29823.m000215 Ricinus communis 29823.m000215 I
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I
Si000907m.g Setaria italica Si000907m.g I
Si006555m.g Setaria italica Si006555m.g I
Si007070m.g Setaria italica Si007070m.g I
Si039629m.g Setaria italica Si039629m.g I
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I
Sb01g015920 Sorghum bicolor Sb01g015920 I
Sb10g023665 Sorghum bicolor Sb10g023665 I
TCM_011907 Theobroma cacao TCM_011907 I
TCM_030853 Theobroma cacao TCM_030853 I
TCM_041010 Theobroma cacao TCM_041010 I
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I
TRIUR3_15006 Triticum urartu TRIUR3_15006 I
TRIUR3_17146 Triticum urartu TRIUR3_17146 I
TRIUR3_20797 Triticum urartu TRIUR3_20797 I
TRIUR3_22706 Triticum urartu TRIUR3_22706 I
TRIUR3_27104 Triticum urartu TRIUR3_27104 I
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I
MYB101 Vitis vinifera VIT_12s0059g00700 I
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I
AC217264.3_FG005 Zea mays AC217264.3_FG005 I
GRMZM2G070523 Zea mays GRMZM2G070523 I
GRMZM2G139688 Zea mays GRMZM2G139688 I
GRMZM2G161512 Zea mays GRMZM2G161512 N
GRMZM2G343068 Zea mays GRMZM2G343068 N