KUCA_T00004103001 (Kuraishia capsulata)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04383 (KilA-N) IPR018004 KUCA_T00004103001 T012038_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SOK2
M00007_2.00 		Saccharomyces cerevisiae
NCMTGCAKGNN
NNCMTGCAKGN		 PBM
Badis et al.(2008)
SOK2_4560 		0.709 0.816
SOK2
M07438_2.00 		Saccharomyces cerevisiae
NNBMTGCAKNN
NNMTGCAKVNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0385.1 		0.709 0.816
SOK2
M08477_2.00 		Saccharomyces cerevisiae
HNBCTGCR
YGCAGVND		 Misc
DeBoer et al.(2011)
YMR016C_404 		0.709 0.816
PHD1
M00006_2.00 		Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC		 PBM
Badis et al.(2008)
PHD1_4559 		0.698 0.805
PHD1
M01516_2.00 		Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN		 PBM
Zhu et al.(2009)
Phd1 		0.698 0.805
PHD1
M07437_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1 		0.698 0.805
PHD1
M07547_2.00 		Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB		 ChIP-exo
Rhee et al.(2011)
Phd1_1 		0.698 0.805
PHD1
M07548_2.00 		Saccharomyces cerevisiae
MYGCRC
GYGCRK		 ChIP-exo
Rhee et al.(2011)
Phd1_2 		0.698 0.805
PHD1
M07549_2.00 		Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA		 ChIP-exo
Rhee et al.(2011)
Phd1_3 		0.698 0.805
PHD1
M08475_2.00 		Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS		 Misc
DeBoer et al.(2011)
YKL043W_393 		0.698 0.805
PHD1
M08476_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 Misc
DeBoer et al.(2011)
YKL043W_554 		0.698 0.805
HCAG_07413
M01651_2.00 		Histoplasma capsulatum
NNNHRYDNNN
NNNHRYDNNN		 PBM
Weirauch et al.(2014)
pTH9346 		0.651 0.759
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CDK28122 APSES 268 359

Links

Other APSES family TFs
Other Kuraishia capsulata TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I
BHLH121 Arabidopsis thaliana AT3G19860 I
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I
Bo1g112310 Brassica oleracea Bo1g112310 I
Bo7g117760 Brassica oleracea Bo7g117760 N
Bra017745 Brassica rapa Bra017745 N
Bra038236 Brassica rapa Bra038236 I
PK18401.1 Cannabis sativa PK18401.1 D
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I
Cla014511 Citrullus lanatus Cla014511 I
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I
Cucsa.043580 Cucumis sativus Cucsa.043580 I
Cucsa.169240 Cucumis sativus Cucsa.169240 I
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I
Thhalv10026039m.g Eutrema salsugineum Thhalv10026039m.g N
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I
GLYMA12G02740 Glycine max GLYMA12G02740 I
GLYMA08G15740 Glycine max GLYMA08G15740 I
GLYMA07G26910 Glycine max GLYMA07G26910 I
GLYMA15G29630 Glycine max GLYMA15G29630 I
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I
Gorai.007G194400 Gossypium raimondii Gorai.007G194400 N
LPERR02G12290 Leersia perrieri LPERR02G12290 I
Lus10028456.g Linum usitatissimum Lus10028456.g I
Lus10041908.g Linum usitatissimum Lus10041908.g I
MDP0000275844 Malus domestica MDP0000275844 I
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I
MTR_4g075480 Medicago truncatula MTR_4g075480 I
mgf017107m Mimulus guttatus mgf017107m I
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I
OB0197G10010 Oryza brachyantha OB0197G10010 I
BGIOSGA008112 Oryza indica BGIOSGA008112 I
OPUNC02G13570 Oryza punctata OPUNC02G13570 I
OS02G0433600 Oryza sativa OS02G0433600 I
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I
Pm021043 Prunus mume Pm021043 I
Pm026758 Prunus mume Pm026758 I
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I
29830.m001386 Ricinus communis 29830.m001386 I
29711.m000322 Ricinus communis 29711.m000322 I
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I
Si017804m.g Setaria italica Si017804m.g I
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I
Sb03g028030 Sorghum bicolor Sb03g028030 I
TCM_000204 Theobroma cacao TCM_000204 I
TCM_006692 Theobroma cacao TCM_006692 I
bHLH121 Vitis vinifera VIT_03s0038g01790 I
bHLH11 Vitis vinifera VIT_04s0023g03430 I
GRMZM2G114444 Zea mays GRMZM2G114444 I