ENSLOCG00000015055 (Lepisosteus oculatus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSLOCG00000015055 T014597_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.744 0.826
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.744 0.826
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.667 0.674
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.627 0.709
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.627 0.709
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.627 0.709
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.627 0.709
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.511 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000018527 ARID/BRIGHT 22 108
ENSLOCP00000018529 ARID/BRIGHT 59 145

Links

Other ARID/BRIGHT family TFs
Other Lepisosteus oculatus TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31908 Aegilops tauschii F775_31908 N 0.000
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.000
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.000
SPL2 Arabidopsis thaliana AT5G43270 N 0.000
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.000
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.000
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.000
Bo5g051980 Brassica oleracea Bo5g051980 I 0.000
Bo7g065290 Brassica oleracea Bo7g065290 N 0.000
Bo9g058970 Brassica oleracea Bo9g058970 N 0.000
Bra027478 Brassica rapa Bra027478 N 0.000
Bra030040 Brassica rapa Bra030040 I 0.000
Bra033671 Brassica rapa Bra033671 N 0.000
PK16953.1 Cannabis sativa PK16953.1 N 0.000
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.000
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.000
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.000
Ca_11356 Cicer arietinum Ca_11356 I 0.000
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.000
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.000
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.000
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.000
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.000
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.000
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.000
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.000
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.000
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.000
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.000
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.000
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.000
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.000
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.000
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.000
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.000
MDP0000155354 Malus domestica MDP0000155354 N 0.000
MDP0000249364 Malus domestica MDP0000249364 N 0.000
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.000
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.000
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.000
mgf010397m Mimulus guttatus mgf010397m N 0.000
mgf019346m Mimulus guttatus mgf019346m I 0.000
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.000
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.000
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.000
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.000
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.000
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.000
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.000
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.000
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.000
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.000
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.000
OBART02G03260 Oryza barthii OBART02G03260 N 0.000
OBART06G26610 Oryza barthii OBART06G26610 N 0.000
OB02G12930 Oryza brachyantha OB02G12930 N 0.000
OB02G14840 Oryza brachyantha OB02G14840 N 0.000
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.000
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.000
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.000
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.000
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.000
SPL3 Oryza indica BGIOSGA007499 N 0.000
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.000
SPL12 Oryza indica BGIOSGA020577 N 0.000
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.000
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.000
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.000
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.000
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.000
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.000
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.000
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.000
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.000
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.000
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.000
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.000
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.000
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.000
OS02G0139400 Oryza sativa OS02G0139400 N 0.000
SPL4 Oryza sativa OS02G0174100 N 0.000
SPL12 Oryza sativa OS06G0703500 N 0.000
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.000
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.000
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.000
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.000
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.000
Pm007020 Prunus mume Pm007020 N 0.000
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.000
29929.m004641 Ricinus communis 29929.m004641 I 0.000
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.000
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.000
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.000
Si017749m.g Setaria italica Si017749m.g N 0.000
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.000
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.000
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.000
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.000
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.000
TCM_008772 Theobroma cacao TCM_008772 N 0.000
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.000
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.000
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.000
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.000
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.000
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.000
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.000
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.000
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.000
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.000
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.000
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.000
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.000