fgenesh1_pg.scaffold_31000088 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh1_pg.scaffold_31000088 T048528_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.876 0.725
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_31000088 bHLH 110 160

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.879
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.890
AMTR_s00029p00112130 Amborella trichopoda AMTR_s00029p00112130 N 0.839
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I 0.844
Bo3g021940 Brassica oleracea Bo3g021940 I 0.844
PK18401.1 Cannabis sativa PK18401.1 D 0.876
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.844
Cla014511 Citrullus lanatus Cla014511 I 0.876
Ciclev10016381m.g Citrus clementina Ciclev10016381m.g N 0.870
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.887
orange1.1g026646m.g Citrus sinensis orange1.1g026646m.g N 0.870
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.887
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.876
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.855
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.876
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.887
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.876
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.841
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.858
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.878
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.866
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.879
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.876
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.879
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.879
MDP0000275844 Malus domestica MDP0000275844 I 0.879
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.876
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.876
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.890
mgf017107m Mimulus guttatus mgf017107m I 0.852
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.879
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.866
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.866
OS02G0433600 Oryza sativa OS02G0433600 I 0.866
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I 0.850
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.914
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I 0.850
fgenesh1_pg.scaffold_13000185 Physcomitrella patens fgenesh1_pg.scaffold_13000185 I 0.850
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.876
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.844
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.887
Pm026758 Prunus mume Pm026758 I 0.876
Pm021043 Prunus mume Pm021043 I 0.879
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.876
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.879
29830.m001386 Ricinus communis 29830.m001386 I 0.879
29711.m000322 Ricinus communis 29711.m000322 I 0.876
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.863
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.874
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I 0.850
SELMODRAFT_165311 Selaginella moellendorffii SELMODRAFT_165311 I 0.850
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.864
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.864
TCM_000204 Theobroma cacao TCM_000204 I 0.879
TCM_006692 Theobroma cacao TCM_006692 I 0.876
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.879
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.876
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I 0.844