PRDM6 (Erinaceus europaeus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSEEUG00000005543 T093562_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 1.000
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000005037 C2H2 ZF 350 371
ENSEEUP00000005037 C2H2 ZF 378 400
ENSEEUP00000005037 C2H2 ZF 406 428
ENSEEUP00000005037 C2H2 ZF 434 455

Links

Other C2H2 ZF family TFs
Other Erinaceus europaeus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17148 Aegilops tauschii F775_17148 I 0.000
F775_20580 Aegilops tauschii F775_20580 I 0.000
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.000
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.000
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.000
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.000
ERF012 Arabidopsis thaliana AT1G21910 D 0.000
ERF014 Arabidopsis thaliana AT1G44830 D 0.000
ERF013 Arabidopsis thaliana AT1G77640 D 0.000
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.000
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.000
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.000
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.000
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.000
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.000
Bo5g034880 Brassica oleracea Bo5g034880 I 0.000
Bo6g004620 Brassica oleracea Bo6g004620 I 0.000
Bo6g121400 Brassica oleracea Bo6g121400 I 0.000
Bo7g059990 Brassica oleracea Bo7g059990 I 0.000
Bo8g071150 Brassica oleracea Bo8g071150 I 0.000
Bra012298 Brassica rapa Bra012298 I 0.000
Bra015660 Brassica rapa Bra015660 I 0.000
Bra016400 Brassica rapa Bra016400 I 0.000
Bra036022 Brassica rapa Bra036022 I 0.000
Bra040309 Brassica rapa Bra040309 I 0.000
PK16069.1 Cannabis sativa PK16069.1 I 0.000
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.000
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.000
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.000
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.000
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.000
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.000
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.000
Ca_25824 Cicer arietinum Ca_25824 I 0.000
Cla014165 Citrullus lanatus Cla014165 I 0.000
Cla023512 Citrullus lanatus Cla023512 I 0.000
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.000
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.000
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.000
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.000
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.000
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.000
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.000
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.000
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.000
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.000
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.000
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.000
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.000
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.000
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.000
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.000
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.000
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.000
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.000
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.000
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.000
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.000
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.000
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.000
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.000
MDP0000120147 Malus domestica MDP0000120147 I 0.000
MDP0000319736 Malus domestica MDP0000319736 I 0.000
MDP0000923690 Malus domestica MDP0000923690 I 0.000
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.000
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.000
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.000
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.000
mgf021045m Mimulus guttatus mgf021045m I 0.000
mgf023290m Mimulus guttatus mgf023290m I 0.000
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.000
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.000
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.000
OBART03G11470 Oryza barthii OBART03G11470 I 0.000
OBART06G07000 Oryza barthii OBART06G07000 I 0.000
OB03G21640 Oryza brachyantha OB03G21640 I 0.000
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.000
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.000
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.000
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.000
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.000
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.000
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.000
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.000
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.000
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.000
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.000
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.000
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.000
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.000
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.000
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.000
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.000
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.000
OS02G0767800 Oryza sativa OS02G0767800 I 0.000
OS03G0263000 Oryza sativa OS03G0263000 I 0.000
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.000
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.000
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.000
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.000
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.000
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.000
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.000
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.000
Pm004870 Prunus mume Pm004870 I 0.000
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.000
29908.m006165 Ricinus communis 29908.m006165 I 0.000
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.000
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.000
Si007977m.g Setaria italica Si007977m.g I 0.000
Si039170m.g Setaria italica Si039170m.g I 0.000
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.000
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.000
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.000
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.000
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.000
TCM_035077 Theobroma cacao TCM_035077 I 0.000
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.000
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.000
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.000
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.000
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.000
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.000
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.000
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.000
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.000