WIP3 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh1_pg.C_scaffold_1000684 T117339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000684 C2H2 ZF 258 279
fgenesh1_pg.C_scaffold_1000684 C2H2 ZF 278 304

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14972 Aegilops tauschii F775_14972 N 0.763
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.803
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.803
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.803
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.790
WIP3 Arabidopsis thaliana AT1G08290 N 0.827
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.790
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.821
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.769
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.763
Bo5g008880 Brassica oleracea Bo5g008880 N 0.817
Bo8g112550 Brassica oleracea Bo8g112550 N 0.817
Bra018638 Brassica rapa Bra018638 N 0.817
Bra031621 Brassica rapa Bra031621 N 0.817
PK05257.1 Cannabis sativa PK05257.1 N 0.779
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.790
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.827
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.827
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.790
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.769
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.785
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.763
Ca_07051 Cicer arietinum Ca_07051 N 0.785
Ca_16482 Cicer arietinum Ca_16482 N 0.785
Ca_27078 Cicer arietinum Ca_27078 N 0.773
Cla000184 Citrullus lanatus Cla000184 N 0.792
Cla002714 Citrullus lanatus Cla002714 N 0.763
Cla015481 Citrullus lanatus Cla015481 N 0.759
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.773
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.785
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.773
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.785
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.759
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.765
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.792
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.763
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.785
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.782
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.827
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.779
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.759
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.785
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.785
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.785
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.759
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.773
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.759
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.785
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.773
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.759
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.785
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.759
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.759
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.785
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.759
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.773
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.763
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.769
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.769
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.809
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.809
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.769
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.773
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.769
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.779
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.773
MDP0000131949 Malus domestica MDP0000131949 N 0.785
MDP0000300013 Malus domestica MDP0000300013 N 0.785
MDP0000573922 Malus domestica MDP0000573922 N 0.770
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.785
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.779
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.759
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.773
mgf022319m Mimulus guttatus mgf022319m N 0.759
mgf022981m Mimulus guttatus mgf022981m N 0.806
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.759
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.769
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.759
OBART08G19670 Oryza barthii OBART08G19670 N 0.769
OB08G26650 Oryza brachyantha OB08G26650 N 0.769
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.769
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.769
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.769
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.769
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.769
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.769
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.769
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.769
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.769
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.769
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.769
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.769
OS08G0504000 Oryza sativa OS08G0504000 N 0.769
OS09G0485600 Oryza sativa OS09G0485600 N 0.769
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.763
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.769
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.769
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.759
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.782
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.785
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.759
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.785
Pm001374 Prunus mume Pm001374 N 0.785
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.785
29908.m006047 Ricinus communis 29908.m006047 N 0.773
30055.m001542 Ricinus communis 30055.m001542 N 0.785
30061.m000294 Ricinus communis 30061.m000294 N 0.759
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.785
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.785
Si013819m.g Setaria italica Si013819m.g N 0.769
Si029897m.g Setaria italica Si029897m.g N 0.763
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.769
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.782
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.769
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.803
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.782
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.763
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.769
TCM_005892 Theobroma cacao TCM_005892 N 0.759
TCM_034881 Theobroma cacao TCM_034881 N 0.773
TCM_041441 Theobroma cacao TCM_041441 N 0.785
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.763
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.763
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.763
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.763
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.763
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.785
TT1 Vitis vinifera VIT_18s0001g05860 N 0.773
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.769
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.763
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.769