GSMUA_Achr4G12160_001 (Musa acuminata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GSMUA_Achr4G12160_001 T118701_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.762 0.800
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.762 0.778
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.761 0.778
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr4P12160_001 C2H2 ZF 84 106
GSMUA_Achr4P12160_001 C2H2 ZF 113 134

Links

Other C2H2 ZF family TFs
Other Musa acuminata TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.762
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.762
ZAT4 Arabidopsis thaliana AT2G45120 D 0.762
ZAT1 Arabidopsis thaliana AT1G02030 D 0.761
ZAT9 Arabidopsis thaliana AT3G60580 D 0.762
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.762
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.762
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.761
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.791
Bo8g095300 Brassica oleracea Bo8g095300 I 0.762
Bo4g195370 Brassica oleracea Bo4g195370 I 0.762
Bo6g077190 Brassica oleracea Bo6g077190 I 0.762
Bo3g037560 Brassica oleracea Bo3g037560 I 0.762
Bo4g104940 Brassica oleracea Bo4g104940 I 0.762
Bra000372 Brassica rapa Bra000372 I 0.762
Bra003422 Brassica rapa Bra003422 I 0.762
Bra007545 Brassica rapa Bra007545 I 0.762
Bra014483 Brassica rapa Bra014483 I 0.762
Bra040325 Brassica rapa Bra040325 I 0.762
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.762
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.762
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.762
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.762
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.762
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.761
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.762
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.762
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.761
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.761
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.762
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.758
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.773
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.758
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.768
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.791
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.792
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.782
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.791
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
OBART02G26700 Oryza barthii OBART02G26700 I 0.782
OBART04G21020 Oryza barthii OBART04G21020 I 0.792
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.792
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.782
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.782
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.792
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.782
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.782
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.792
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.782
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.792
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.792
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.782
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.792
OS04G0552700 Oryza sativa OS04G0552700 I 0.792
OS02G0659500 Oryza sativa OS02G0659500 I 0.782
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.762
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.768
30174.m008818 Ricinus communis 30174.m008818 I 0.768
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.767
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.762
Si010615m.g Setaria italica Si010615m.g I 0.768
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.762
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.761
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.761
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.756
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.762
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.782
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.762
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.768