POPTR_0001s28350 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0001s28350 T222470_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.645 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s28350.1 Homeodomain 19 75
POPTR_0001s28350.2 Homeodomain 19 75

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.000
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N 0.000
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.000
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.000
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.000
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N 0.000
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.000
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.000
Thaps10099 Thalassiosira pseudonana Thaps10099 N 0.000
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.000
Thaps22889 Thalassiosira pseudonana Thaps22889 N 0.000
Thaps24954 Thalassiosira pseudonana Thaps24954 N 0.000
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.000
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.000
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.000
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.000
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.000