CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0174s00240
(
Populus trichocarpa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
POPTR_0174s00240
T222590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0174s00240.1
Homeodomain
6
58
AILQEHNNTMPAREVLVSLAEKFSESPDRKGNIQVQMKQVWNWFQNRRYAIRA
Links
Other
Homeodomain
family TFs
Other
Populus trichocarpa
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCCAN_04049
Ancylostoma caninum
ANCCAN_04049
I
0.608
ANCCAN_14745
Ancylostoma caninum
ANCCAN_14745
N
0.602
ANCCAN_19464
Ancylostoma caninum
ANCCAN_19464
N
0.614
ANCCEY_01003
Ancylostoma ceylanicum
ANCCEY_01003
I
0.608
ANCDUO_22747
Ancylostoma duodenale
ANCDUO_22747
N
0.608
ANCDUO_16102
Ancylostoma duodenale
ANCDUO_16102
N
0.614
ACAC_0000669701
Angiostrongylus cantonensis
ACAC_0000669701
N
0.610
AARA009718
Anopheles arabiensis
AARA009718
N
0.608
ADIR002916
Anopheles dirus
ADIR002916
N
0.608
AEPI008543
Anopheles epiroticus
AEPI008543
N
0.608
AFAF003697
Anopheles farauti
AFAF003697
N
0.608
AFUN006006
Anopheles funestus
AFUN006006
N
0.608
AMIN003814
Anopheles minimus
AMIN003814
N
0.608
ASTEI04299
Anopheles stephensi
ASTEI04299
N
0.608
fgenesh2_kg.3__2039__AT3G18380.2
Arabidopsis lyrata
fgenesh2_kg.3__2039__AT3G18380.2
N
0.764
AT3G18380
Arabidopsis thaliana
AT3G18380
N
0.764
Bostr.19424s0824
Boechera stricta
Bostr.19424s0824
N
0.752
Bo5g118650
Brassica oleracea
Bo5g118650
N
0.735
Bra022316
Brassica rapa
Bra022316
N
0.814
PK03811.1
Cannabis sativa
PK03811.1
N
0.634
Cagra.1681s0007
Capsella grandiflora
Cagra.1681s0007
N
0.752
Carubv10014092m.g
Capsella rubella
Carubv10014092m.g
N
0.752
evm.TU.supercontig_80.16
Carica papaya
evm.TU.supercontig_80.16
N
0.805
orange1.1g016887m.g
Citrus sinensis
orange1.1g016887m.g
N
0.853
Cucsa.032420
Cucumis sativus
Cucsa.032420
N
0.863
CpipJ_CPIJ015117
Culex pipiens
CpipJ_CPIJ015117
N
0.608
CPIJ015117
Culex quinquefasciatus
CPIJ015117
N
0.608
YQE_02583
Dendroctonus ponderosae
YQE_02583
N
0.608
DICVIV_01479
Dictyocaulus viviparus
DICVIV_01479
N
0.602
DME_0000947201
Dracunculus medinensis
DME_0000947201
N
0.618
GM19280
Drosophila sechellia
FBgn0174180
N
0.617
ECPE_0000616401
Echinostoma caproni
ECPE_0000616401
N
0.618
EVEC_0001374701
Enterobius vermicularis
EVEC_0001374701
N
0.610
ENSGALG00000020423
Gallus gallus
ENSGALG00000020423
N
0.614
GLYMA12G18490
Glycine max
GLYMA12G18490
N
0.775
Gorai.002G065900
Gossypium raimondii
Gorai.002G065900
N
0.825
Gorai.013G172000
Gossypium raimondii
Gorai.013G172000
N
0.760
HHAL005220-PA
Halyomorpha halys
HHAL005220-PA
N
0.618
Hba_10254
Heterorhabditis bacteriophora
Hba_10254
N
0.608
Hba_19301
Heterorhabditis bacteriophora
Hba_19301
N
0.608
TTAC_0000456101
Hydatigera taeniaeformis
TTAC_0000456101
N
0.638
snap_masked-nMf.1.1.scaf05842-processed-gene-0.7
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf05842-processed-gene-0.7
N
0.618
Minc14799
Meloidogyne incognita
Minc14799
N
0.625
NECAME_04746
Necator americanus
NECAME_04746
N
0.614
Ocbimv22022773m.g
Octopus bimaculoides
Ocbimv22022773m.g
I
0.608
SNAPOd2T00027099001
Oikopleura dioica
SNAPOd2T00027099001
N
0.608
OGLUM06G16330
Oryza glumaepatula
OGLUM06G16330
N
0.652
POPTR_0011s09970
Populus trichocarpa
POPTR_0011s09970
N
0.640
scaffold958-EXSNAP2012.2
Pristionchus exspectatus
scaffold958-EXSNAP2012.2
N
0.600
PXEA_0000997401
Protopolystoma xenopodis
PXEA_0000997401
N
0.608
PXEA_0001530801
Protopolystoma xenopodis
PXEA_0001530801
N
0.608
PXEA_0003344501
Protopolystoma xenopodis
PXEA_0003344501
N
0.618
Pm011344
Prunus mume
Pm011344
N
0.789
SapurV1A.0083s0320
Salix purpurea
SapurV1A.0083s0320
N
0.795
SCUD_0001900601
Schistosoma curassoni
SCUD_0001900601
N
0.618
SCUD_0000482001
Schistosoma curassoni
SCUD_0000482001
I
0.608
A_05161
Schistosoma haematobium
A_05161
N
0.612
A_08314
Schistosoma haematobium
A_08314
N
0.628
SMRZ_0000101601
Schistosoma margrebowiei
SMRZ_0000101601
N
0.618
SMTD_0000662501
Schistosoma mattheei
SMTD_0000662501
N
0.618
SMTD_0001595501
Schistosoma mattheei
SMTD_0001595501
N
0.608
SMU15030938
Schmidtea mediterranea
SMU15030938
N
0.618
SPER_0001728701
Spirometra erinaceieuropaei
SPER_0001728701
N
0.617
SPER_0002932401
Spirometra erinaceieuropaei
SPER_0002932401
N
0.618
L596_g19867
Steinernema carpocapsae
L596_g19867
N
0.607
TASK_0000266001
Taenia asiatica
TASK_0000266001
N
0.627
TsM_000403100
Taenia solium
TsM_000403100
N
0.608
TsM_001096000
Taenia solium
TsM_001096000
N
0.624
TRE_0000350801
Trichobilharzia regenti
TRE_0000350801
N
0.618
TRE_0000664901
Trichobilharzia regenti
TRE_0000664901
N
0.618
WUBG_18725
Wuchereria bancrofti
WUBG_18725
N
0.625
GRMZM2G111204
Zea mays
GRMZM2G111204
N
0.653