Bo6g050870 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo6g050870 T247991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.939 0.800
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g050870.1 MADF 88 163

Links

Other MADF family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.000
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.000
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.000
MBD11 Arabidopsis thaliana AT3G15790 N 0.000
MBD10 Arabidopsis thaliana AT1G15340 N 0.000
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.000
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.000
Bo8g066360 Brassica oleracea Bo8g066360 N 0.000
Bo8g106130 Brassica oleracea Bo8g106130 N 0.000
Bra016665 Brassica rapa Bra016665 N 0.000
Bra021136 Brassica rapa Bra021136 N 0.000
Bra026773 Brassica rapa Bra026773 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
PK24888.1 Cannabis sativa PK24888.1 N 0.000
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
Ca_19192 Cicer arietinum Ca_19192 N 0.000
Ca_06682 Cicer arietinum Ca_06682 N 0.000
Cla012920 Citrullus lanatus Cla012920 N 0.000
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.000
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.000
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.000
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.000
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.000
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.000
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.000
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.000
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.000
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.000
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.000
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.000
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.000
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
MDP0000301302 Malus domestica MDP0000301302 N 0.000
MDP0000375866 Malus domestica MDP0000375866 N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.000
MTR_4g010210 Medicago truncatula MTR_4g010210 N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.000
29841.m002855 Ricinus communis 29841.m002855 N 0.000
TCM_027169 Theobroma cacao TCM_027169 N 0.000
TCM_038107 Theobroma cacao TCM_038107 N 0.000
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.000