Carubv10001830m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10001830m.g T250618_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.875 0.806
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.875 0.806
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001830m MADF 33 107

Links

Other MADF family TFs
Other Capsella rubella TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.893
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.875
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.893
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.893
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.855
Bo5g136850 Brassica oleracea Bo5g136850 I 0.894
Bo9g177060 Brassica oleracea Bo9g177060 I 0.871
Bra009119 Brassica rapa Bra009119 I 0.871
Bra034165 Brassica rapa Bra034165 I 0.883
Bra034866 Brassica rapa Bra034866 I 0.866
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.923
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.865
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.849
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.835
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.835
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.894
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.812
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.816
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.813
MDP0000097759 Malus domestica MDP0000097759 N 0.848
MDP0000943251 Malus domestica MDP0000943251 N 0.817
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.849
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.849
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.864
29814.m000741 Ricinus communis 29814.m000741 I 0.850
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.849
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.835
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.835
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.884