Pm004349 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm004349 T257031_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.938 0.938
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.938 0.938
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.854 0.854
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.792 0.792
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.792 0.792
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.771 0.771
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.771 0.771
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.771 0.771
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.771 0.771
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.729 0.729
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.729 0.729
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.729 0.729
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.729 0.729
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.729 0.729
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.729 0.729
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.708 0.708
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.708 0.708
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.708 0.708
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.708 0.708
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.708 0.708
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.708 0.708
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.708 0.708
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.708 0.708
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.708 0.708
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.708 0.708
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.708 0.708
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.708 0.708
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm004349 MADS box 10 57

Links

Other MADS box family TFs
Other Prunus mume TFs

1104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_52406 Aegilops tauschii F775_52406 I 0.000
AMTR_s00047p00181740 Amborella trichopoda AMTR_s00047p00181740 I 0.000
AGL79 Arabidopsis lyrata Al_scaffold_0005_914 I 0.000
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.000
AGL8 Arabidopsis lyrata scaffold_802730.1 I 0.000
AGL79 Arabidopsis thaliana AT3G30260 I 0.000
PI Arabidopsis thaliana AT5G20240 D 0.000
AGL8 Arabidopsis thaliana AT5G60910 I 0.000
Bostr.0556s0620 Boechera stricta Bostr.0556s0620 I 0.000
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.000
Bostr.26833s0146 Boechera stricta Bostr.26833s0146 I 0.000
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.000
Bo2g020730 Brassica oleracea Bo2g020730 I 0.000
Bo2g149440 Brassica oleracea Bo2g149440 I 0.000
Bo2g161210 Brassica oleracea Bo2g161210 I 0.000
Bo3g010390 Brassica oleracea Bo3g010390 I 0.000
Bo3g014100 Brassica oleracea Bo3g014100 I 0.000
Bo4g024840 Brassica oleracea Bo4g024840 I 0.729
Bo9g009030 Brassica oleracea Bo9g009030 I 0.000
Bo9g152080 Brassica oleracea Bo9g152080 I 0.000
Bra002285 Brassica rapa Bra002285 I 0.000
Bra004927 Brassica rapa Bra004927 I 0.729
Bra020093 Brassica rapa Bra020093 I 0.000
Bra020742 Brassica rapa Bra020742 I 0.000
Bra029347 Brassica rapa Bra029347 I 0.000
Bra035952 Brassica rapa Bra035952 I 0.000
Bra036201 Brassica rapa Bra036201 I 0.000
PK14825.1 Cannabis sativa PK14825.1 I 0.729
PK29837.1 Cannabis sativa PK29837.1 I 0.000
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.000
Cagra.2834s0001 Capsella grandiflora Cagra.2834s0001 I 0.000
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.000
Carubv10018408m.g Capsella rubella Carubv10018408m.g I 0.000
Carubv10027017m.g Capsella rubella Carubv10027017m.g I 0.000
evm.TU.supercontig_1.162 Carica papaya evm.TU.supercontig_1.162 I 0.000
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.000
Ca_12381 Cicer arietinum Ca_12381 I 0.000
Ca_13111 Cicer arietinum Ca_13111 I 0.000
Ca_13222 Cicer arietinum Ca_13222 I 0.000
Ca_24649 Cicer arietinum Ca_24649 I 0.000
Cla018825 Citrullus lanatus Cla018825 I 0.000
Cla023547 Citrullus lanatus Cla023547 I 0.000
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.000
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.000
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.000
orange1.1g035470m.g Citrus sinensis orange1.1g035470m.g I 0.000
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.000
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.000
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.000
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.000
Cucsa.113430 Cucumis sativus Cucsa.113430 I 0.000
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.000
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.000
Eucgr.K02547 Eucalyptus grandis Eucgr.K02547 I 0.000
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.729
Thhalv10004769m.g Eutrema salsugineum Thhalv10004769m.g I 0.000
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.000
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.000
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.000
gene13356-v1.0-hybrid Fragaria vesca gene13356-v1.0-hybrid I 0.000
gene26119-v1.0-hybrid Fragaria vesca gene26119-v1.0-hybrid I 0.000
GLYMA01G08150 Glycine max GLYMA01G08150 I 0.000
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.000
GLYMA06G22650 Glycine max GLYMA06G22650 I 0.000
GLYMA08G36380 Glycine max GLYMA08G36380 I 0.000
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.000
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.000
GLYMA16G13070 Glycine max GLYMA16G13070 I 0.000
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.000
Gorai.001G075800 Gossypium raimondii Gorai.001G075800 I 0.000
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.000
Gorai.003G103000 Gossypium raimondii Gorai.003G103000 I 0.000
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.000
Gorai.012G185500 Gossypium raimondii Gorai.012G185500 I 0.000
MLOC_61901 Hordeum vulgare MLOC_61901 D 0.000
Q9LEI3_HORVU Hordeum vulgare Q9LEI3_HORVU D 0.000
Lus10004637.g Linum usitatissimum Lus10004637.g I 0.000
Lus10007983.g Linum usitatissimum Lus10007983.g I 0.000
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.000
Lus10021140.g Linum usitatissimum Lus10021140.g I 0.000
Lus10026679.g Linum usitatissimum Lus10026679.g I 0.000
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.000
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.000
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.000
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.000
LjT09J10.60.nc Lotus japonicus LjT09J10.60.nc I 0.000
LjT13A22.110.nc Lotus japonicus LjT13A22.110.nc I 0.000
LjT46F13.10.nd Lotus japonicus LjT46F13.10.nd I 0.000
MDP0000013331 Malus domestica MDP0000013331 I 0.000
O82695_MALDO Malus domestica O82695_MALDO D 0.000
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.000
cassava10810.m1 Manihot esculenta cassava10810.m1 I 0.000
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.771
cassava29331.valid.m1 Manihot esculenta cassava29331.valid.m1 I 0.000
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.812
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.000
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.000
cassava40221.m1 Manihot esculenta cassava40221.m1 I 0.708
cassava9991.m1 Manihot esculenta cassava9991.m1 I 0.000
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.000
MTR_8g066260 Medicago truncatula MTR_8g066260 I 0.000
mgf007109m Mimulus guttatus mgf007109m I 0.000
GSMUA_Achr10G06580_001 Musa acuminata GSMUA_Achr10G06580_001 I 0.729
GSMUA_Achr2G13650_001 Musa acuminata GSMUA_Achr2G13650_001 I 0.000
GSMUA_Achr8G04330_001 Musa acuminata GSMUA_Achr8G04330_001 I 0.000
OBART07G00700 Oryza barthii OBART07G00700 I 0.000
OBART07G21550 Oryza barthii OBART07G21550 I 0.000
OB07G10630 Oryza brachyantha OB07G10630 I 0.000
OB07G27140 Oryza brachyantha OB07G27140 I 0.000
ORGLA07G0005200 Oryza glaberrima ORGLA07G0005200 I 0.000
ORGLA07G0222800 Oryza glaberrima ORGLA07G0222800 I 0.000
OGLUM07G00660 Oryza glumaepatula OGLUM07G00660 I 0.000
OGLUM07G21410 Oryza glumaepatula OGLUM07G21410 I 0.000
BGIOSGA024961 Oryza indica BGIOSGA024961 I 0.000
BGIOSGA026097 Oryza indica BGIOSGA026097 I 0.000
OLONG_015048 Oryza longistaminata OLONG_015048 I 0.000
OMERI07G00180 Oryza meridionalis OMERI07G00180 I 0.000
OMERI07G17960 Oryza meridionalis OMERI07G17960 I 0.000
ONIVA01G47560 Oryza nivara ONIVA01G47560 I 0.000
ONIVA07G20220 Oryza nivara ONIVA07G20220 I 0.000
OPUNC07G00470 Oryza punctata OPUNC07G00470 I 0.000
OPUNC07G20110 Oryza punctata OPUNC07G20110 I 0.000
ORUFI07G00610 Oryza rufipogon ORUFI07G00610 I 0.000
ORUFI07G22480 Oryza rufipogon ORUFI07G22480 I 0.000
MADS15 Oryza sativa OS07G0108900 D 0.000
MADS18 Oryza sativa OS07G0605200 D 0.000
Pavir.Ba00457 Panicum virgatum Pavir.Ba00457 I 0.000
Pavir.Ba03990 Panicum virgatum Pavir.Ba03990 I 0.000
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.000
Pavir.Bb03293 Panicum virgatum Pavir.Bb03293 I 0.000
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.000
POPTR_0004s11430 Populus trichocarpa POPTR_0004s11430 I 0.000
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.000
POPTR_0010s16390 Populus trichocarpa POPTR_0010s16390 I 0.000
POPTR_0012s05950 Populus trichocarpa POPTR_0012s05950 I 0.000
Pm004718 Prunus mume Pm004718 I 0.000
Pm025026 Prunus mume Pm025026 I 0.000
PRUPE_ppa010308mg Prunus persica PRUPE_ppa010308mg I 0.000
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.000
29648.m001978 Ricinus communis 29648.m001978 I 0.000
30138.m003939 Ricinus communis 30138.m003939 I 0.000
SapurV1A.0072s0360 Salix purpurea SapurV1A.0072s0360 I 0.000
SapurV1A.0176s0500 Salix purpurea SapurV1A.0176s0500 I 0.000
SapurV1A.0323s0180 Salix purpurea SapurV1A.0323s0180 I 0.000
SapurV1A.0884s0020 Salix purpurea SapurV1A.0884s0020 I 0.000
Si010898m.g Setaria italica Si010898m.g I 0.729
Si030802m.g Setaria italica Si030802m.g I 0.000
Si030896m.g Setaria italica Si030896m.g I 0.000
Solyc02g065730.1 Solanum lycopersicum Solyc02g065730.1 I 0.000
Solyc05g056620.1 Solanum lycopersicum Solyc05g056620.1 I 0.000
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.000
PGSC0003DMG400026563 Solanum tuberosum PGSC0003DMG400026563 I 0.000
PGSC0003DMG400028358 Solanum tuberosum PGSC0003DMG400028358 I 0.000
Sb02g001090 Sorghum bicolor Sb02g001090 I 0.000
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.000
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.729
TCM_011475 Theobroma cacao TCM_011475 I 0.000
TCM_014345 Theobroma cacao TCM_014345 I 0.000
TCM_035212 Theobroma cacao TCM_035212 I 0.000
Traes_2AL_20C2D79E1 Triticum aestivum Traes_2AL_20C2D79E1 I 0.000
Traes_2BL_26F24E716 Triticum aestivum Traes_2BL_26F24E716 I 0.000
Traes_2BS_4818EA1FF Triticum aestivum Traes_2BS_4818EA1FF I 0.000
Traes_2DL_903A29CBA Triticum aestivum Traes_2DL_903A29CBA I 0.000
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.727
TRIUR3_20925 Triticum urartu TRIUR3_20925 I 0.000
TRIUR3_21876 Triticum urartu TRIUR3_21876 I 0.000
VIT_01s0011g00100 Vitis vinifera VIT_01s0011g00100 I 0.000
AGL8 Vitis vinifera VIT_17s0000g04990 I 0.000
PI Vitis vinifera VIT_18s0001g01760 I 0.000
GRMZM2G072582 Zea mays GRMZM2G072582 I 0.000
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.000
GRMZM2G148693 Zea mays GRMZM2G148693 I 0.000
Q41829_MAIZE Zea mays Q41829_MAIZE D 0.000
Q9FR84_MAIZE Zea mays Q9FR84_MAIZE D 0.000