LjSGA_057783.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_057783.1 T259387_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_057783.1 MADS box 1 28

Links

Other MADS box family TFs
Other Lotus japonicus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N
MBD11 Arabidopsis lyrata scaffold_301848.1 N
MBD11 Arabidopsis thaliana AT3G15790 N
MBD10 Arabidopsis thaliana AT1G15340 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N
Bo8g066360 Brassica oleracea Bo8g066360 N
Bra016665 Brassica rapa Bra016665 N
Bra021136 Brassica rapa Bra021136 N
Bra027207 Brassica rapa Bra027207 N
PK04144.1 Cannabis sativa PK04144.1 N
PK24888.1 Cannabis sativa PK24888.1 N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
Ca_19192 Cicer arietinum Ca_19192 N
Cla012920 Citrullus lanatus Cla012920 N
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N
Cucsa.096390 Cucumis sativus Cucsa.096390 N
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N
GLYMA13G44230 Glycine max GLYMA13G44230 N
GLYMA04G23780 Glycine max GLYMA04G23780 N
GLYMA04G23980 Glycine max GLYMA04G23980 N
GLYMA06G25310 Glycine max GLYMA06G25310 N
GLYMA06G30590 Glycine max GLYMA06G30590 N
GLYMA15G01040 Glycine max GLYMA15G01040 N
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N
MDP0000152128 Malus domestica MDP0000152128 N
MDP0000248422 Malus domestica MDP0000248422 N
MDP0000375866 Malus domestica MDP0000375866 N
MDP0000574053 Malus domestica MDP0000574053 N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N
Pm013666 Prunus mume Pm013666 N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N
TCM_027169 Theobroma cacao TCM_027169 N
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N