mbd3a (Danio rerio)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 ENSDARG00000061774 T260105_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MBD2
M09256_2.00 		Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B 		0.795 0.795
Mbd2
M09258_2.00 		Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB		 Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B 		0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000082941 MBD 1 72
ENSDARP00000082941 MBD 77 145
ENSDARP00000123868 MBD 4 40
ENSDARP00000123868 MBD 45 113
ENSDARP00000124340 MBD 1 72
ENSDARP00000124340 MBD 77 145

Links

Other MBD family TFs
Other Danio rerio TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04223 Aegilops tauschii F775_04223 I 0.000
F775_43210 Aegilops tauschii F775_43210 I 0.000
AMTR_s00025p00244880 Amborella trichopoda AMTR_s00025p00244880 N 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.000
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.000
BRADI1G20090 Brachypodium distachyon BRADI1G20090 N 0.000
BRADI4G39420 Brachypodium distachyon BRADI4G39420 N 0.000
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.000
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.000
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.000
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.000
OBART01G45740 Oryza barthii OBART01G45740 N 0.000
OBART09G00850 Oryza barthii OBART09G00850 N 0.000
OBART09G00790 Oryza barthii OBART09G00790 N 0.000
OBART02G04930 Oryza barthii OBART02G04930 N 0.000
OB01G55160 Oryza brachyantha OB01G55160 N 0.000
OB06G21580 Oryza brachyantha OB06G21580 N 0.000
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.000
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.000
ORGLA09G0007100 Oryza glaberrima ORGLA09G0007100 N 0.000
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.000
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.000
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.000
OGLUM09G01090 Oryza glumaepatula OGLUM09G01090 N 0.000
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.000
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.000
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.000
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.000
BGIOSGA030219 Oryza indica BGIOSGA030219 N 0.000
OLONG_000580 Oryza longistaminata OLONG_000580 N 0.000
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.000
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.000
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.000
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.000
ONIVA09G00820 Oryza nivara ONIVA09G00820 N 0.000
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.000
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.000
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.000
OPUNC09G08220 Oryza punctata OPUNC09G08220 N 0.000
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.000
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.000
ORUFI09G00820 Oryza rufipogon ORUFI09G00820 N 0.000
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.000
OS01G0975800 Oryza sativa OS01G0975800 N 0.000
OS09G0116000 Oryza sativa OS09G0116000 N 0.000
OS09G0116800 Oryza sativa OS09G0116800 N 0.000
OS09G0402533 Oryza sativa OS09G0402533 N 0.000
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.000
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.000
Pavir.Fb00782 Panicum virgatum Pavir.Fb00782 I 0.000
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.000
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.000
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.000
Si032189m.g Setaria italica Si032189m.g N 0.000
Si038960m.g Setaria italica Si038960m.g N 0.000
Si019951m.g Setaria italica Si019951m.g I 0.000
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.000
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.000
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.000
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.000
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.000
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.000
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.000
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.000
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.000
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.000
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.000
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.000