MYB28 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_802785.1 T279422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.718 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_802785.1 Myb 14 61
scaffold_802785.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I
PK29337.1 Cannabis sativa PK29337.1 I
PK24260.1 Cannabis sativa PK24260.1 N
Ca_19041 Cicer arietinum Ca_19041 N
Cla021845 Citrullus lanatus Cla021845 I
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I
Eucgr.L02563 Eucalyptus grandis Eucgr.L02563 N
gene01997-v1.0-hybrid Fragaria vesca gene01997-v1.0-hybrid I
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N
GLYMA06G45554 Glycine max GLYMA06G45554 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA12G11490 Glycine max GLYMA12G11490 N
GLYMA12G32530 Glycine max GLYMA12G32530 I
GLYMA12G32541 Glycine max GLYMA12G32541 N
GLYMA13G37903 Glycine max GLYMA13G37903 I
GLYMA06G45520 Glycine max GLYMA06G45520 N
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I
Lus10033737.g Linum usitatissimum Lus10033737.g N
Lus10018518.g Linum usitatissimum Lus10018518.g N
Lus10018547.g Linum usitatissimum Lus10018547.g N
Lus10022021.g Linum usitatissimum Lus10022021.g I
Lus10042561.g Linum usitatissimum Lus10042561.g I
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N
MDP0000148689 Malus domestica MDP0000148689 N
cassava14699.m1 Manihot esculenta cassava14699.m1 I
cassava25784.m1 Manihot esculenta cassava25784.m1 I
cassava26895.m1 Manihot esculenta cassava26895.m1 N
cassava47180.m1 Manihot esculenta cassava47180.m1 I
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
MTR_0063s0090 Medicago truncatula MTR_0063s0090 N
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N
MTR_0008s0280 Medicago truncatula MTR_0008s0280 N
mgf022158m Mimulus guttatus mgf022158m N
mgf018684m Mimulus guttatus mgf018684m N
mgf011672m Mimulus guttatus mgf011672m I
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
Pm030488 Prunus mume Pm030488 I
Pm028882 Prunus mume Pm028882 I
Pm015547 Prunus mume Pm015547 I
Pm015303 Prunus mume Pm015303 I
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N
PGSC0003DMG400046667 Solanum tuberosum PGSC0003DMG400046667 N
PGSC0003DMG400047175 Solanum tuberosum PGSC0003DMG400047175 N
TCM_007868 Theobroma cacao TCM_007868 I
TCM_026197 Theobroma cacao TCM_026197 I
TRIUR3_31731 Triticum urartu TRIUR3_31731 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I