Pavir.J01622 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J01622 T289309_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.844 0.894
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.835 0.894
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.835 0.894
AT2G38300
M07056_2.00 		Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW		 Dap-seq
OMalley et al.(2016)
AT2G38300_col_a 		0.767 0.830
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.674 0.702
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.674 0.702
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.674 0.681
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.674 0.681
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.667 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01622.1.p Myb 80 131

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

452 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_06315 Aegilops tauschii F775_06315 I
F775_14172 Aegilops tauschii F775_14172 I
F775_28589 Aegilops tauschii F775_28589 I
F775_29427 Aegilops tauschii F775_29427 I
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I
Aquca_027_00267 Aquilegia coerulea Aquca_027_00267 N
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I
fgenesh2_kg.397__1__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.397__1__AT3G24310.1 N
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I
MYB3 Arabidopsis thaliana AT1G22640 D
ATMYB48 Arabidopsis thaliana AT3G46130 I
MYB59 Arabidopsis thaliana AT5G59780 D
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N
Bo2g025410 Brassica oleracea Bo2g025410 I
Bo3g130340 Brassica oleracea Bo3g130340 I
Bo9g140750 Brassica oleracea Bo9g140750 I
Bra002533 Brassica rapa Bra002533 I
Bra006694 Brassica rapa Bra006694 I
Bra018223 Brassica rapa Bra018223 I
Bra020289 Brassica rapa Bra020289 I
PK07010.1 Cannabis sativa PK07010.1 N
PK16488.1 Cannabis sativa PK16488.1 N
PK22178.1 Cannabis sativa PK22178.1 N
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I
Cagra.10348s0001 Capsella grandiflora Cagra.10348s0001 N
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I
Carubv10017875m.g Capsella rubella Carubv10017875m.g I
Carubv10019409m.g Capsella rubella Carubv10019409m.g I
Carubv10027237m.g Capsella rubella Carubv10027237m.g N
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I
Ca_02593 Cicer arietinum Ca_02593 I
Ca_07872 Cicer arietinum Ca_07872 I
Ca_11427 Cicer arietinum Ca_11427 N
Ca_16710 Cicer arietinum Ca_16710 N
Cla008413 Citrullus lanatus Cla008413 I
Cla013488 Citrullus lanatus Cla013488 I
Ciclev10006469m.g Citrus clementina Ciclev10006469m.g N
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I
Ciclev10009700m.g Citrus clementina Ciclev10009700m.g N
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I
Cucsa.213500 Cucumis sativus Cucsa.213500 I
Cucsa.379880 Cucumis sativus Cucsa.379880 I
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I
Thhalv10022197m.g Eutrema salsugineum Thhalv10022197m.g N
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I
GLYMA03G41965 Glycine max GLYMA03G41965 N
GLYMA08G27660 Glycine max GLYMA08G27660 I
GLYMA10G26681 Glycine max GLYMA10G26681 I
GLYMA11G15180 Glycine max GLYMA11G15180 I
GLYMA12G07110 Glycine max GLYMA12G07110 I
GLYMA13G40830 Glycine max GLYMA13G40830 I
GLYMA15G04620 Glycine max GLYMA15G04620 I
GLYMA17G17560 Glycine max GLYMA17G17560 I
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I
MLOC_52439 Hordeum vulgare MLOC_52439 I
MLOC_78504 Hordeum vulgare MLOC_78504 I
LPERR01G40120 Leersia perrieri LPERR01G40120 I
LPERR05G01030 Leersia perrieri LPERR05G01030 I
LPERR12G13390 Leersia perrieri LPERR12G13390 I
Lus10005886.g Linum usitatissimum Lus10005886.g I
Lus10023711.g Linum usitatissimum Lus10023711.g I
Lus10040861.g Linum usitatissimum Lus10040861.g N
LjT39N06.160.nd Lotus japonicus LjT39N06.160.nd N
MDP0000143156 Malus domestica MDP0000143156 I
MDP0000177010 Malus domestica MDP0000177010 I
MDP0000581761 Malus domestica MDP0000581761 N
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I
cassava13590.valid.m1 Manihot esculenta cassava13590.valid.m1 N
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I
cassava29437.valid.m1 Manihot esculenta cassava29437.valid.m1 N
MTR_1g045610 Medicago truncatula MTR_1g045610 I
MTR_2g096380 Medicago truncatula MTR_2g096380 I
MTR_4g063100 Medicago truncatula MTR_4g063100 I
mgf018170m Mimulus guttatus mgf018170m N
mgf020363m Mimulus guttatus mgf020363m I
mgf025691m Mimulus guttatus mgf025691m I
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I
OBART01G27550 Oryza barthii OBART01G27550 N
OBART01G45730 Oryza barthii OBART01G45730 I
OBART05G01080 Oryza barthii OBART05G01080 I
OB01G54920 Oryza brachyantha OB01G54920 I
OB05G11070 Oryza brachyantha OB05G11070 I
OB11G27690 Oryza brachyantha OB11G27690 I
OB12G23080 Oryza brachyantha OB12G23080 I
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I
BGIOSGA005283 Oryza indica BGIOSGA005283 I
BGIOSGA019054 Oryza indica BGIOSGA019054 I
BGIOSGA033532 Oryza indica BGIOSGA033532 I
BGIOSGA035986 Oryza indica BGIOSGA035986 I
OLONG_004480 Oryza longistaminata OLONG_004480 I
OMERI05G01150 Oryza meridionalis OMERI05G01150 I
ONIVA05G01120 Oryza nivara ONIVA05G01120 I
OPUNC01G44650 Oryza punctata OPUNC01G44650 I
OPUNC05G00970 Oryza punctata OPUNC05G00970 I
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I
MYBAS1 Oryza sativa OS11G0700500 I
MYBAS2 Oryza sativa OS12G0567300 I
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I
Pavir.J04129 Panicum virgatum Pavir.J04129 I
Pavir.J08441 Panicum virgatum Pavir.J08441 I
Pavir.J11500 Panicum virgatum Pavir.J11500 I
Pavir.J11826 Panicum virgatum Pavir.J11826 I
Pavir.J33560 Panicum virgatum Pavir.J33560 I
Pavir.J36591 Panicum virgatum Pavir.J36591 I
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I
Pm000809 Prunus mume Pm000809 I
Pm009050 Prunus mume Pm009050 I
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I
29788.m000340 Ricinus communis 29788.m000340 I
30072.m000986 Ricinus communis 30072.m000986 N
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I
SapurV1A.2099s0020 Salix purpurea SapurV1A.2099s0020 N
SapurV1A.2154s0020 Salix purpurea SapurV1A.2154s0020 N
Si022826m.g Setaria italica Si022826m.g I
Si023104m.g Setaria italica Si023104m.g I
Si024470m.g Setaria italica Si024470m.g I
Solyc06g005310.2 Solanum lycopersicum Solyc06g005310.2 N
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I
Solyc06g075660.2 Solanum lycopersicum Solyc06g075660.2 N
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I
PGSC0003DMG400030397 Solanum tuberosum PGSC0003DMG400030397 N
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
PGSC0003DMG402010883 Solanum tuberosum PGSC0003DMG402010883 N
Sb05g027360 Sorghum bicolor Sb05g027360 I
Sb05g027370 Sorghum bicolor Sb05g027370 N
Sb08g018580 Sorghum bicolor Sb08g018580 I
Sb09g001590 Sorghum bicolor Sb09g001590 I
TCM_022293 Theobroma cacao TCM_022293 I
TCM_041904 Theobroma cacao TCM_041904 I
Traes_1BS_060C24872 Triticum aestivum Traes_1BS_060C24872 N
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I
Traes_2AL_E2F8D46CE Triticum aestivum Traes_2AL_E2F8D46CE N
Traes_2DL_77F235694 Triticum aestivum Traes_2DL_77F235694 N
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I
TRIUR3_16687 Triticum urartu TRIUR3_16687 I
TRIUR3_16862 Triticum urartu TRIUR3_16862 I
TRIUR3_22432 Triticum urartu TRIUR3_22432 I
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I
GRMZM2G047626 Zea mays GRMZM2G047626 I
GRMZM2G048136 Zea mays GRMZM2G048136 I
GRMZM2G130149 Zea mays GRMZM2G130149 I
GRMZM2G305856 Zea mays GRMZM2G305856 I