CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Thhalv10028153m.g *(Eutrema salsugineum)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Thhalv10028153m.g	T290165_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.862	0.870
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.814	0.891
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.814	0.891
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.814	0.891
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.800	0.848
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.800	0.848
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.792	0.891
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.779	0.783
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.779	0.783
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.779	0.783
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.779	0.783
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.779	0.783
CCA1 M00875_2.00	Arabidopsis thaliana	NDNRWATCN	NGATWYNHN	PBM Franco-Zorrilla et al.(2014) CCA1	0.752	0.804
CCA1 M11039_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CCA1_Q5	0.752	0.804
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.700	0.652
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.700	0.652
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.700	0.652
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.693	0.652
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.693	0.652
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.693	0.652
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.693	0.652
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.693	0.652
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.693	0.652
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.683	0.630
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.683	0.630
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.683	0.630
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Thhalv10028153m	Myb	39	84	REKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFF

Links
Other Myb/SANT family TFs
Other *Eutrema salsugineum* TFs

461 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
evm.TU.supercontig_81.122	Carica papaya	evm.TU.supercontig_81.122	N
Ciclev10027926m.g	Citrus clementina	Ciclev10027926m.g	N
orange1.1g045051m.g	Citrus sinensis	orange1.1g045051m.g	N
Cucsa.117770	Cucumis sativus	Cucsa.117770	N
Eucgr.B02328	Eucalyptus grandis	Eucgr.B02328	N
Gorai.009G098100	Gossypium raimondii	Gorai.009G098100	N
Gorai.003G130400	Gossypium raimondii	Gorai.003G130400	N
Lus10040787.g	Linum usitatissimum	Lus10040787.g	N
cassava34369.m1	Manihot esculenta	cassava34369.m1	N
cassava34368.m1	Manihot esculenta	cassava34368.m1	N
POPTR_0009s03850	Populus trichocarpa	POPTR_0009s03850	N
POPTR_0001s24890	Populus trichocarpa	POPTR_0001s24890	N
Pm000717	Prunus mume	Pm000717	N
Pm000713	Prunus mume	Pm000713	N
Pm000712	Prunus mume	Pm000712	N
PRUPE_ppa026849mg	Prunus persica	PRUPE_ppa026849mg	N
PRUPE_ppa021807mg	Prunus persica	PRUPE_ppa021807mg	N
PRUPE_ppa019574mg	Prunus persica	PRUPE_ppa019574mg	N
PRUPE_ppa002472mg	Prunus persica	PRUPE_ppa002472mg	N
PRUPE_ppa002166mg	Prunus persica	PRUPE_ppa002166mg	N
28650.m000186	Ricinus communis	28650.m000186	N
SapurV1A.0040s0520	Salix purpurea	SapurV1A.0040s0520	N
SapurV1A.0041s0200	Salix purpurea	SapurV1A.0041s0200	N
TCM_041810	Theobroma cacao	TCM_041810	N
Traes_5AL_9AE0ED26A	Triticum aestivum	Traes_5AL_9AE0ED26A	N
Traes_4DS_050789E2A	Triticum aestivum	Traes_4DS_050789E2A	N
VIT_06s0004g04980	Vitis vinifera	VIT_06s0004g04980	N

Thhalv10028153m.g (Eutrema salsugineum) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

461 Related TFs

Thhalv10028153m.g **(Eutrema salsugineum)
Myb/SANT**