tetur19g03130 (Tetranychus urticae)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 tetur19g03130 T318826_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.754 0.772
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.754 0.772
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.754 0.772
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.754 0.772
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.754 0.772
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.754 0.772
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.754 0.772
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.754 0.772
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.754 0.772
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.752 0.772
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.752 0.772
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.752 0.772
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.752 0.772
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.751 0.785
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.751 0.759
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.751 0.759
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.751 0.759
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.751 0.759
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.751 0.759
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.751 0.759
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.751 0.772
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.751 0.772
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.751 0.772
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.751 0.772
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.751 0.772
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.751 0.772
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.751 0.772
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.751 0.772
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.751 0.772
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.751 0.772
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.751 0.772
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.750 0.772
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.750 0.759
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.748 0.747
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.746 0.759
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.746 0.759
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.746 0.759
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.743 0.747
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.743 0.747
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.743 0.747
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.743 0.747
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.743 0.747
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.742 0.747
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.742 0.747
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.732 0.734
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.726 0.671
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.700 0.608
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.700 0.608
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.700 0.608
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.700 0.608
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.700 0.608
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.700 0.608
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.671 0.532
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.655 0.405
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.655 0.405
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.655 0.405
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.655 0.405
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.655 0.405
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
tetur19g03130.1 RFX 136 214

Links

Other RFX family TFs
Other Tetranychus urticae TFs

712 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_22066 Ancylostoma caninum ANCCAN_22066 I
ANCCEY_12461 Ancylostoma ceylanicum ANCCEY_12461 I
ANCDUO_15746 Ancylostoma duodenale ANCDUO_15746 I
ACAC_0000956101 Angiostrongylus cantonensis ACAC_0000956101 I
ACOC_0000749401 Angiostrongylus costaricensis ACOC_0000749401 I
ASU_00971 Ascaris suum ASU_00971 I
BXY_0816300 Bursaphelenchus xylophilus BXY_0816300 I
BXY_0019500 Bursaphelenchus xylophilus BXY_0019500 N
BXY_0053200 Bursaphelenchus xylophilus BXY_0053200 I
CBN00088 Caenorhabditis brenneri CBN00088 I
CBN05776 Caenorhabditis brenneri CBN05776 I
CBN28641 Caenorhabditis brenneri CBN28641 I
CBN21958 Caenorhabditis brenneri CBN21958 I
CBG22587 Caenorhabditis briggsae CBG22587 I
CBG03860 Caenorhabditis briggsae CBG03860 I
CBG03466 Caenorhabditis briggsae CBG03466 I
CBG14996 Caenorhabditis briggsae CBG14996 I
CBG14997 Caenorhabditis briggsae CBG14997 I
nhr-4 Caenorhabditis elegans WBGene00003603 I
nhr-34 Caenorhabditis elegans WBGene00003627 D
nhr-62 Caenorhabditis elegans WBGene00003652 I
nhr-100 Caenorhabditis elegans WBGene00003690 I
nhr-118 Caenorhabditis elegans WBGene00003708 I
nhr-138 Caenorhabditis elegans WBGene00003728 I
CJA39530 Caenorhabditis japonica CJA39530 I
CJA11132 Caenorhabditis japonica CJA11132 N
CJA19445 Caenorhabditis japonica CJA19445 I
CJA18307 Caenorhabditis japonica CJA18307 I
CJA14611 Caenorhabditis japonica CJA14611 I
CJA14248 Caenorhabditis japonica CJA14248 I
CRE10779 Caenorhabditis remanei CRE10779 I
CRE29874 Caenorhabditis remanei CRE29874 I
CRE22212 Caenorhabditis remanei CRE22212 I
CRE09416 Caenorhabditis remanei CRE09416 I
CRE08264 Caenorhabditis remanei CRE08264 I
CRE07035 Caenorhabditis remanei CRE07035 I
CRE07034 Caenorhabditis remanei CRE07034 I
CRE07033 Caenorhabditis remanei CRE07033 I
DICVIV_01644 Dictyocaulus viviparus DICVIV_01644 I
EVEC_0000864401 Enterobius vermicularis EVEC_0000864401 I
HCOI00094500 Haemonchus contortus HCOI00094500 I
HCOI01442000 Haemonchus contortus HCOI01442000 I
HCOI01927800 Haemonchus contortus HCOI01927800 I
HCOI01945300 Haemonchus contortus HCOI01945300 I
HCOI02126500 Haemonchus contortus HCOI02126500 I
HPLM_0001358001 Haemonchus placei HPLM_0001358001 I
HPBE_0001438801 Heligmosomoides bakeri HPBE_0001438801 I
HPBE_0001524301 Heligmosomoides bakeri HPBE_0001524301 I
Hba_17038 Heterorhabditis bacteriophora Hba_17038 I
Hba_17946 Heterorhabditis bacteriophora Hba_17946 I
NECAME_02375 Necator americanus NECAME_02375 I
NBR_0000015501 Nippostrongylus brasiliensis NBR_0000015501 I
PTRK_0000748600 Parastrongyloides trichosuri PTRK_0000748600 I
scaffold52-EXSNAP2012.30 Pristionchus exspectatus scaffold52-EXSNAP2012.30 I
Ppa-nhr-61 Pristionchus pacificus PPA27722 I
RSKR_0000178700 Rhabditophanes kr3021 RSKR_0000178700 I
L596_g9904 Steinernema carpocapsae L596_g9904 I
L596_g7829 Steinernema carpocapsae L596_g7829 I
L596_g25910 Steinernema carpocapsae L596_g25910 I
L596_g26401 Steinernema carpocapsae L596_g26401 I
L889_g15424 Steinernema feltiae L889_g15424 I
L889_g16305 Steinernema feltiae L889_g16305 I
L889_g31970 Steinernema feltiae L889_g31970 I
L889_g366 Steinernema feltiae L889_g366 I
L893_g263 Steinernema glaseri L893_g263 I
L893_g6565 Steinernema glaseri L893_g6565 I
L893_g5404 Steinernema glaseri L893_g5404 I
L893_g33656 Steinernema glaseri L893_g33656 I
L898_g11608 Steinernema monticolum L898_g11608 I
L898_g5338 Steinernema monticolum L898_g5338 I
L898_g9613 Steinernema monticolum L898_g9613 I
L892_g17832 Steinernema scapterisci L892_g17832 I
L892_g3438 Steinernema scapterisci L892_g3438 I
L892_g17146 Steinernema scapterisci L892_g17146 I
SPAL_0000533900 Strongyloides papillosus SPAL_0000533900 I
SSTP_0000860300 Strongyloides stercoralis SSTP_0000860300 I
SVE_0105800 Strongyloides venezuelensis SVE_0105800 I
SVUK_0000195901 Strongylus vulgaris SVUK_0000195901 I
SMUV_0000230901 Syphacia muris SMUV_0000230901 I
TELCIR_07460 Teladorsagia circumcincta TELCIR_07460 I