CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Ppa-nhr-61
(
Pristionchus pacificus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
PPA27722
T305938_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.900
0.585
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA27722
Nuclear receptor
6
70
SIICAFGKHYGVNACNGCKGFFRRSVWNNRTYLCRFEGNCAIAKEHRNVCRACRLKQCFLSGMNP
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus pacificus
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold277-EXSNAP2012.12
Pristionchus exspectatus
scaffold277-EXSNAP2012.12
I
0.989
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.987
CBN05776
Caenorhabditis brenneri
CBN05776
I
0.987
CJA19445
Caenorhabditis japonica
CJA19445
I
0.987
CRE08264
Caenorhabditis remanei
CRE08264
I
0.987
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.987
DICVIV_11073
Dictyocaulus viviparus
DICVIV_11073
I
0.987
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.987
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.987
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.987
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.987
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.986
L596_g9904
Steinernema carpocapsae
L596_g9904
I
0.986
L892_g17832
Steinernema scapterisci
L892_g17832
I
0.986
CBG03466
Caenorhabditis briggsae
CBG03466
I
0.982
CBN28641
Caenorhabditis brenneri
CBN28641
I
0.982
CJA14611
Caenorhabditis japonica
CJA14611
I
0.982
CRE29874
Caenorhabditis remanei
CRE29874
I
0.982
nhr-4
Caenorhabditis elegans
WBGene00003603
I
0.982
ACAC_0000956101
Angiostrongylus cantonensis
ACAC_0000956101
I
0.982
ACOC_0000749401
Angiostrongylus costaricensis
ACOC_0000749401
I
0.982
DICVIV_01644
Dictyocaulus viviparus
DICVIV_01644
I
0.982
HCOI00094500
Haemonchus contortus
HCOI00094500
I
0.982
HCOI01442000
Haemonchus contortus
HCOI01442000
I
0.982
HPBE_0001524301
Heligmosomoides bakeri
HPBE_0001524301
I
0.982
L596_g26401
Steinernema carpocapsae
L596_g26401
I
0.979
L889_g16305
Steinernema feltiae
L889_g16305
I
0.979
L892_g17146
Steinernema scapterisci
L892_g17146
I
0.979
L893_g6565
Steinernema glaseri
L893_g6565
I
0.979
L898_g5338
Steinernema monticolum
L898_g5338
I
0.979
L889_g366
Steinernema feltiae
L889_g366
I
0.976
L893_g5404
Steinernema glaseri
L893_g5404
I
0.976
BXY_0053200
Bursaphelenchus xylophilus
BXY_0053200
I
0.975
CRE22212
Caenorhabditis remanei
CRE22212
I
0.972
PTRK_0001236400
Parastrongyloides trichosuri
PTRK_0001236400
I
0.970
genemark-nMf.1.1.scaf00584-processed-gene-0.4
Meloidogyne floridensis
genemark-nMf.1.1.scaf00584-processed-gene-0.4
I
0.967
PPA14696
Pristionchus pacificus
PPA14696
I
0.950
CJA02727
Caenorhabditis japonica
CJA02727
I
0.949
nhr-21
Caenorhabditis elegans
WBGene00003620
I
0.947
CBG13142
Caenorhabditis briggsae
CBG13142
I
0.946
CBN04415
Caenorhabditis brenneri
CBN04415
I
0.946
CBN32300
Caenorhabditis brenneri
CBN32300
I
0.946
CRE26423
Caenorhabditis remanei
CRE26423
I
0.946
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.943
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.943
L898_g9613
Steinernema monticolum
L898_g9613
I
0.939
BXY_1082600
Bursaphelenchus xylophilus
BXY_1082600
I
0.937
L889_g15424
Steinernema feltiae
L889_g15424
I
0.937
L893_g33656
Steinernema glaseri
L893_g33656
I
0.937
CBG04240
Caenorhabditis briggsae
CBG04240
I
0.935
genemark-nMf.1.1.scaf02603-processed-gene-0.3
Meloidogyne floridensis
genemark-nMf.1.1.scaf02603-processed-gene-0.3
I
0.932
MhA1_Contig1031.frz3.gene17
Meloidogyne hapla
MhA1_Contig1031.frz3.gene17
N
0.928
CJA06107
Caenorhabditis japonica
CJA06107
I
0.920
nhr-61
Caenorhabditis elegans
WBGene00003651
I
0.920
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.911
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.911
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.911
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.911
ASU_00971
Ascaris suum
ASU_00971
I
0.909
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.909
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.909
CRE24933
Caenorhabditis remanei
CRE24933
I
0.908
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.902
CJA14248
Caenorhabditis japonica
CJA14248
I
0.902
CRE07033
Caenorhabditis remanei
CRE07033
I
0.902
CRE10779
Caenorhabditis remanei
CRE10779
I
0.902
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.900
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.900
L889_g31970
Steinernema feltiae
L889_g31970
I
0.900
L893_g263
Steinernema glaseri
L893_g263
I
0.900
L898_g11608
Steinernema monticolum
L898_g11608
I
0.900
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.894
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.894
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.894
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.894
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.894
NECAME_02375
Necator americanus
NECAME_02375
I
0.894
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.894
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.894
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.887
scaffold488-EXSNAP2012.17
Pristionchus exspectatus
scaffold488-EXSNAP2012.17
I
0.870
RSKR_0000426600
Rhabditophanes kr3021
RSKR_0000426600
N
0.868
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.862
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.856
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.852
RSKR_0001175400
Rhabditophanes kr3021
RSKR_0001175400
I
0.846
NECAME_11708
Necator americanus
NECAME_11708
N
0.845
Bm5457
Brugia malayi
Bm5457
I
0.844
CBG22776
Caenorhabditis briggsae
CBG22776
I
0.844
CBN08474
Caenorhabditis brenneri
CBN08474
I
0.844
CJA14035
Caenorhabditis japonica
CJA14035
I
0.844
CRE21925
Caenorhabditis remanei
CRE21925
I
0.844
LOAG_07549
Loa loa
LOAG_07549
I
0.844
nhr-14
Caenorhabditis elegans
WBGene00003613
I
0.844
WBGene00239376
Onchocerca volvulus
WBGene00239376
I
0.844
ASIM_0001548701
Anisakis simplex
ASIM_0001548701
I
0.844
BTMF_0001565301
Brugia timori
BTMF_0001565301
I
0.844
EEL_0000265301
Elaeophora elaphi
EEL_0000265301
I
0.844
L596_g9277
Steinernema carpocapsae
L596_g9277
I
0.844
L889_g25097
Steinernema feltiae
L889_g25097
I
0.844
L892_g186
Steinernema scapterisci
L892_g186
I
0.844
L898_g18440
Steinernema monticolum
L898_g18440
I
0.844
nAv.1.0.1.g08447
Acanthocheilonema viteae
nAv.1.0.1.g08447
I
0.844
nDi.2.2.2.g03974
Dirofilaria immitis
nDi.2.2.2.g03974
I
0.844
nLs.2.1.2.g04526
Litomosoides sigmodontis
nLs.2.1.2.g04526
I
0.844
nOo.2.0.1.g02628
Onchocerca ochengi
nOo.2.0.1.g02628
I
0.844
OFLC_0000076301
Onchocerca flexuosa
OFLC_0000076301
I
0.844
PTRK_0001591500
Parastrongyloides trichosuri
PTRK_0001591500
I
0.844
SPAL_0001056000
Strongyloides papillosus
SPAL_0001056000
I
0.844
SSTP_0000230100
Strongyloides stercoralis
SSTP_0000230100
I
0.844
SVE_1768400
Strongyloides venezuelensis
SVE_1768400
I
0.844
TCLT_0000342401
Thelazia callipaeda
TCLT_0000342401
I
0.844
TCNE_0000582701
Toxocara canis
TCNE_0000582701
I
0.844
Ppa-nhr-14
Pristionchus pacificus
PPA06980
I
0.841
scaffold1338-EXSNAP2012.3
Pristionchus exspectatus
scaffold1338-EXSNAP2012.3
I
0.841
GPLIN_000327200
Globodera pallida
GPLIN_000327200
I
0.837
L893_g6023
Steinernema glaseri
L893_g6023
I
0.833
CRE09416
Caenorhabditis remanei
CRE09416
I
0.832
SMUV_0000835401
Syphacia muris
SMUV_0000835401
I
0.830
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.828
MhA1_Contig691.frz3.gene13
Meloidogyne hapla
MhA1_Contig691.frz3.gene13
I
0.818
Minc11307
Meloidogyne incognita
Minc11307
I
0.815
ACAC_0000445401
Angiostrongylus cantonensis
ACAC_0000445401
N
0.815
TELCIR_16512
Teladorsagia circumcincta
TELCIR_16512
N
0.815
BXY_0861500
Bursaphelenchus xylophilus
BXY_0861500
I
0.813
CRE07035
Caenorhabditis remanei
CRE07035
I
0.808
nhr-100
Caenorhabditis elegans
WBGene00003690
I
0.803
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.798
HPBE_0001033901
Heligmosomoides bakeri
HPBE_0001033901
I
0.792
CJA39530
Caenorhabditis japonica
CJA39530
I
0.791
ANCCAN_20599
Ancylostoma caninum
ANCCAN_20599
I
0.789
CGOC_0000279901
Cylicostephanus goldi
CGOC_0000279901
I
0.789
HPLM_0000308401
Haemonchus placei
HPLM_0000308401
I
0.789
OESDEN_00859
Oesophagostomum dentatum
OESDEN_00859
I
0.789
SMUV_0001036101
Syphacia muris
SMUV_0001036101
I
0.783
CBG14997
Caenorhabditis briggsae
CBG14997
I
0.773
nhr-138
Caenorhabditis elegans
WBGene00003728
I
0.757
CJA18307
Caenorhabditis japonica
CJA18307
I
0.749