GPLIN_000327200 (Globodera pallida)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 GPLIN_000327200 T308668_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-34
M00690_2.00 		Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN		 PBM
Narasimhan et al.(2015)
pTH9907 		0.841 0.557
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.788 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000327200 Nuclear receptor 10 79

Links

Other Nuclear receptor family TFs
Other Globodera pallida TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BXY_0861500 Bursaphelenchus xylophilus BXY_0861500 I 0.981
Ppa-nhr-14 Pristionchus pacificus PPA06980 I 0.980
Minc11307 Meloidogyne incognita Minc11307 I 0.980
L893_g6023 Steinernema glaseri L893_g6023 I 0.980
scaffold1338-EXSNAP2012.3 Pristionchus exspectatus scaffold1338-EXSNAP2012.3 I 0.980
L596_g9277 Steinernema carpocapsae L596_g9277 I 0.979
L889_g25097 Steinernema feltiae L889_g25097 I 0.979
L892_g186 Steinernema scapterisci L892_g186 I 0.979
L898_g18440 Steinernema monticolum L898_g18440 I 0.979
MhA1_Contig691.frz3.gene13 Meloidogyne hapla MhA1_Contig691.frz3.gene13 I 0.979
Bm5457 Brugia malayi Bm5457 I 0.977
CBG22776 Caenorhabditis briggsae CBG22776 I 0.977
CBN08474 Caenorhabditis brenneri CBN08474 I 0.977
CJA14035 Caenorhabditis japonica CJA14035 I 0.977
CRE21925 Caenorhabditis remanei CRE21925 I 0.977
LOAG_07549 Loa loa LOAG_07549 I 0.977
nhr-14 Caenorhabditis elegans WBGene00003613 I 0.977
WBGene00239376 Onchocerca volvulus WBGene00239376 I 0.977
ASIM_0001548701 Anisakis simplex ASIM_0001548701 I 0.977
BTMF_0001565301 Brugia timori BTMF_0001565301 I 0.977
EEL_0000265301 Elaeophora elaphi EEL_0000265301 I 0.977
nAv.1.0.1.g08447 Acanthocheilonema viteae nAv.1.0.1.g08447 I 0.977
nDi.2.2.2.g03974 Dirofilaria immitis nDi.2.2.2.g03974 I 0.977
nLs.2.1.2.g04526 Litomosoides sigmodontis nLs.2.1.2.g04526 I 0.977
nOo.2.0.1.g02628 Onchocerca ochengi nOo.2.0.1.g02628 I 0.977
OFLC_0000076301 Onchocerca flexuosa OFLC_0000076301 I 0.977
PTRK_0001591500 Parastrongyloides trichosuri PTRK_0001591500 I 0.977
SPAL_0001056000 Strongyloides papillosus SPAL_0001056000 I 0.977
SSTP_0000230100 Strongyloides stercoralis SSTP_0000230100 I 0.977
SVE_1768400 Strongyloides venezuelensis SVE_1768400 I 0.977
TCLT_0000342401 Thelazia callipaeda TCLT_0000342401 I 0.977
TCNE_0000582701 Toxocara canis TCNE_0000582701 I 0.977
SMUV_0000835401 Syphacia muris SMUV_0000835401 I 0.974
ANCCAN_20599 Ancylostoma caninum ANCCAN_20599 I 0.970
CGOC_0000279901 Cylicostephanus goldi CGOC_0000279901 I 0.970
HPBE_0001033901 Heligmosomoides bakeri HPBE_0001033901 I 0.970
HPLM_0000308401 Haemonchus placei HPLM_0000308401 I 0.970
OESDEN_00859 Oesophagostomum dentatum OESDEN_00859 I 0.970
RSKR_0001175400 Rhabditophanes kr3021 RSKR_0001175400 I 0.965
L892_g3438 Steinernema scapterisci L892_g3438 I 0.932
L596_g7829 Steinernema carpocapsae L596_g7829 I 0.931
L889_g15424 Steinernema feltiae L889_g15424 I 0.925
L893_g33656 Steinernema glaseri L893_g33656 I 0.925
L898_g9613 Steinernema monticolum L898_g9613 I 0.924
nhr-21 Caenorhabditis elegans WBGene00003620 I 0.915
HPBE_0001438801 Heligmosomoides bakeri HPBE_0001438801 I 0.898
nhr-118 Caenorhabditis elegans WBGene00003708 I 0.894
PTRK_0001236400 Parastrongyloides trichosuri PTRK_0001236400 I 0.890
BXY_1082600 Bursaphelenchus xylophilus BXY_1082600 I 0.889
CBG03860 Caenorhabditis briggsae CBG03860 I 0.888
CBG13142 Caenorhabditis briggsae CBG13142 I 0.888
CBN04415 Caenorhabditis brenneri CBN04415 I 0.888
CBN05776 Caenorhabditis brenneri CBN05776 I 0.888
CBN32300 Caenorhabditis brenneri CBN32300 I 0.888
CJA19445 Caenorhabditis japonica CJA19445 I 0.888
CRE08264 Caenorhabditis remanei CRE08264 I 0.888
CRE26423 Caenorhabditis remanei CRE26423 I 0.888
nhr-62 Caenorhabditis elegans WBGene00003652 I 0.888
HCOI01945300 Haemonchus contortus HCOI01945300 I 0.888
HCOI02126500 Haemonchus contortus HCOI02126500 I 0.888
HPLM_0001358001 Haemonchus placei HPLM_0001358001 I 0.888
CJA02727 Caenorhabditis japonica CJA02727 I 0.887
Hba_17038 Heterorhabditis bacteriophora Hba_17038 I 0.887
CJA06107 Caenorhabditis japonica CJA06107 I 0.875
nhr-61 Caenorhabditis elegans WBGene00003651 I 0.875
CBG03466 Caenorhabditis briggsae CBG03466 I 0.874
CBN28641 Caenorhabditis brenneri CBN28641 I 0.874
CJA14611 Caenorhabditis japonica CJA14611 I 0.874
CRE29874 Caenorhabditis remanei CRE29874 I 0.874
nhr-4 Caenorhabditis elegans WBGene00003603 I 0.874
ACAC_0000956101 Angiostrongylus cantonensis ACAC_0000956101 I 0.874
ACOC_0000749401 Angiostrongylus costaricensis ACOC_0000749401 I 0.874
DICVIV_01644 Dictyocaulus viviparus DICVIV_01644 I 0.874
HCOI00094500 Haemonchus contortus HCOI00094500 I 0.874
HCOI01442000 Haemonchus contortus HCOI01442000 I 0.874
HPBE_0001524301 Heligmosomoides bakeri HPBE_0001524301 I 0.874
CRE24933 Caenorhabditis remanei CRE24933 I 0.869
CBG04240 Caenorhabditis briggsae CBG04240 I 0.868
BXY_0053200 Bursaphelenchus xylophilus BXY_0053200 I 0.850
L596_g9904 Steinernema carpocapsae L596_g9904 I 0.850
L892_g17832 Steinernema scapterisci L892_g17832 I 0.850
NBR_0000015501 Nippostrongylus brasiliensis NBR_0000015501 I 0.849
NECAME_02375 Necator americanus NECAME_02375 I 0.849
nhr-34 Caenorhabditis elegans WBGene00003627 D 0.841
ANCCAN_22066 Ancylostoma caninum ANCCAN_22066 I 0.840
ANCCEY_12461 Ancylostoma ceylanicum ANCCEY_12461 I 0.840
ANCDUO_15746 Ancylostoma duodenale ANCDUO_15746 I 0.840
HCOI01927800 Haemonchus contortus HCOI01927800 I 0.840
SVUK_0000195901 Strongylus vulgaris SVUK_0000195901 I 0.840
TELCIR_07460 Teladorsagia circumcincta TELCIR_07460 I 0.840
CBG22587 Caenorhabditis briggsae CBG22587 I 0.838
CRE07033 Caenorhabditis remanei CRE07033 I 0.838
CRE10779 Caenorhabditis remanei CRE10779 I 0.838
Ppa-nhr-61 Pristionchus pacificus PPA27722 I 0.837
L596_g26401 Steinernema carpocapsae L596_g26401 I 0.829
L889_g16305 Steinernema feltiae L889_g16305 I 0.829
L892_g17146 Steinernema scapterisci L892_g17146 I 0.829
L893_g6565 Steinernema glaseri L893_g6565 I 0.829
L898_g5338 Steinernema monticolum L898_g5338 I 0.829
L889_g366 Steinernema feltiae L889_g366 I 0.827
L893_g5404 Steinernema glaseri L893_g5404 I 0.827
L596_g25910 Steinernema carpocapsae L596_g25910 I 0.826
L889_g31970 Steinernema feltiae L889_g31970 I 0.826
L893_g263 Steinernema glaseri L893_g263 I 0.826
L898_g11608 Steinernema monticolum L898_g11608 I 0.826
CJA14248 Caenorhabditis japonica CJA14248 I 0.823
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I 0.817
DICVIV_11073 Dictyocaulus viviparus DICVIV_11073 I 0.816
L596_g10816 Steinernema carpocapsae L596_g10816 I 0.814
L889_g2977 Steinernema feltiae L889_g2977 I 0.814
L892_g23093 Steinernema scapterisci L892_g23093 I 0.814
L898_g32368 Steinernema monticolum L898_g32368 I 0.814
CRE22212 Caenorhabditis remanei CRE22212 I 0.813
ASU_00971 Ascaris suum ASU_00971 I 0.813
EVEC_0000864401 Enterobius vermicularis EVEC_0000864401 I 0.813
SMUV_0000230901 Syphacia muris SMUV_0000230901 I 0.813
CBG14996 Caenorhabditis briggsae CBG14996 I 0.812
BXY_1057700 Bursaphelenchus xylophilus BXY_1057700 I 0.812
ACAC_0000711701 Angiostrongylus cantonensis ACAC_0000711701 I 0.810
DICVIV_00957 Dictyocaulus viviparus DICVIV_00957 I 0.810
HCOI00618700 Haemonchus contortus HCOI00618700 I 0.810
PTRK_0000748600 Parastrongyloides trichosuri PTRK_0000748600 I 0.807
RSKR_0000178700 Rhabditophanes kr3021 RSKR_0000178700 I 0.807
scaffold277-EXSNAP2012.12 Pristionchus exspectatus scaffold277-EXSNAP2012.12 I 0.806
PTRK_0001020800 Parastrongyloides trichosuri PTRK_0001020800 I 0.803
SPAL_0001099500 Strongyloides papillosus SPAL_0001099500 I 0.803
SSTP_0000769100 Strongyloides stercoralis SSTP_0000769100 I 0.803
SVE_0858700 Strongyloides venezuelensis SVE_0858700 I 0.803
scaffold52-EXSNAP2012.30 Pristionchus exspectatus scaffold52-EXSNAP2012.30 I 0.802
CRE09416 Caenorhabditis remanei CRE09416 I 0.801
WBGene00236987 Onchocerca volvulus WBGene00236987 I 0.792
nOo.2.0.1.g02345 Onchocerca ochengi nOo.2.0.1.g02345 I 0.792
BXY_1057600 Bursaphelenchus xylophilus BXY_1057600 I 0.791
SPAL_0000841700 Strongyloides papillosus SPAL_0000841700 I 0.791
SVE_1799100 Strongyloides venezuelensis SVE_1799100 I 0.791
PTRK_0000720500 Parastrongyloides trichosuri PTRK_0000720500 I 0.790
SPAL_0000533900 Strongyloides papillosus SPAL_0000533900 I 0.790
SSTP_0000145700 Strongyloides stercoralis SSTP_0000145700 I 0.790
SSTP_0000860300 Strongyloides stercoralis SSTP_0000860300 I 0.790
SVE_0105800 Strongyloides venezuelensis SVE_0105800 I 0.790
TCLT_0000461101 Thelazia callipaeda TCLT_0000461101 I 0.790
LOAG_08615 Loa loa LOAG_08615 I 0.789
CBG03844 Caenorhabditis briggsae CBG03844 I 0.788
CBN18198 Caenorhabditis brenneri CBN18198 I 0.788
CBN20749 Caenorhabditis brenneri CBN20749 I 0.788
CRE08259 Caenorhabditis remanei CRE08259 I 0.788
nhr-49 Caenorhabditis elegans WBGene00003639 D 0.788
ASU_03870 Ascaris suum ASU_03870 I 0.788
GPLIN_001175700 Globodera pallida GPLIN_001175700 I 0.788
PEQ_0000391501 Parascaris equorum PEQ_0000391501 I 0.788
CRE07035 Caenorhabditis remanei CRE07035 I 0.785
genemark-nMf.1.1.scaf00584-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00584-processed-gene-0.4 I 0.773
CBG03848 Caenorhabditis briggsae CBG03848 I 0.771
CBN11344 Caenorhabditis brenneri CBN11344 I 0.771
CBN14643 Caenorhabditis brenneri CBN14643 I 0.771
CJA14599 Caenorhabditis japonica CJA14599 I 0.771
CRE08089 Caenorhabditis remanei CRE08089 I 0.771
nhr-69 Caenorhabditis elegans WBGene00003659 I 0.771
Bm4980 Brugia malayi Bm4980 I 0.768
BTMF_0000217201 Brugia timori BTMF_0000217201 I 0.768
DME_0000591901 Dracunculus medinensis DME_0000591901 I 0.768
CBG14997 Caenorhabditis briggsae CBG14997 I 0.761
CBN00088 Caenorhabditis brenneri CBN00088 I 0.759
CBN21958 Caenorhabditis brenneri CBN21958 I 0.759
genemark-nMf.1.1.scaf02603-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf02603-processed-gene-0.3 I 0.756
ENSGMOG00000002967 Gadus morhua ENSGMOG00000002967 I 0.751
L596_g11035 Steinernema carpocapsae L596_g11035 I 0.749
L889_g17247 Steinernema feltiae L889_g17247 I 0.749
L893_g13285 Steinernema glaseri L893_g13285 I 0.749
L898_g26357 Steinernema monticolum L898_g26357 I 0.749
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I 0.748
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I 0.747
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I 0.747
ANCCAN_08267 Ancylostoma caninum ANCCAN_08267 I 0.746
NBR_0001473401 Nippostrongylus brasiliensis NBR_0001473401 I 0.746