CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
CBN00088
(
Caenorhabditis brenneri
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBN00088
T301645_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.944
0.643
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN00088
Nuclear receptor
22
91
EGCLVCGDENAKRHYGAMSCNGCKGFFRRSIWENREYRCSFGKECVIVYKYRNRCRYCRLQRCLDVGMDK
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis brenneri
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBN21958
Caenorhabditis brenneri
CBN21958
I
0.994
CRE07035
Caenorhabditis remanei
CRE07035
I
0.968
CBG14997
Caenorhabditis briggsae
CBG14997
I
0.965
CRE09416
Caenorhabditis remanei
CRE09416
I
0.962
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.951
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.948
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.948
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.948
NECAME_02375
Necator americanus
NECAME_02375
I
0.948
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.948
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.947
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.947
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.947
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.946
CRE07033
Caenorhabditis remanei
CRE07033
I
0.946
CRE10779
Caenorhabditis remanei
CRE10779
I
0.946
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.946
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.944
ASU_00971
Ascaris suum
ASU_00971
I
0.942
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.942
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.942
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.942
CJA14248
Caenorhabditis japonica
CJA14248
I
0.940
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.940
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.939
L889_g31970
Steinernema feltiae
L889_g31970
I
0.939
L893_g263
Steinernema glaseri
L893_g263
I
0.939
L898_g11608
Steinernema monticolum
L898_g11608
I
0.939
CRE07034
Caenorhabditis remanei
CRE07034
I
0.935
CJA39530
Caenorhabditis japonica
CJA39530
I
0.932
nhr-100
Caenorhabditis elegans
WBGene00003690
I
0.931
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.927
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.927
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.927
nhr-138
Caenorhabditis elegans
WBGene00003728
I
0.924
CJA18307
Caenorhabditis japonica
CJA18307
I
0.917
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.902
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.901
BXY_0861500
Bursaphelenchus xylophilus
BXY_0861500
I
0.887
Bm5457
Brugia malayi
Bm5457
I
0.868
CBG22776
Caenorhabditis briggsae
CBG22776
I
0.868
CBN08474
Caenorhabditis brenneri
CBN08474
I
0.868
CJA14035
Caenorhabditis japonica
CJA14035
I
0.868
CRE21925
Caenorhabditis remanei
CRE21925
I
0.868
LOAG_07549
Loa loa
LOAG_07549
I
0.868
nhr-14
Caenorhabditis elegans
WBGene00003613
I
0.868
WBGene00239376
Onchocerca volvulus
WBGene00239376
I
0.868
BTMF_0001565301
Brugia timori
BTMF_0001565301
I
0.868
EEL_0000265301
Elaeophora elaphi
EEL_0000265301
I
0.868
nAv.1.0.1.g08447
Acanthocheilonema viteae
nAv.1.0.1.g08447
I
0.868
nDi.2.2.2.g03974
Dirofilaria immitis
nDi.2.2.2.g03974
I
0.868
nLs.2.1.2.g04526
Litomosoides sigmodontis
nLs.2.1.2.g04526
I
0.868
nOo.2.0.1.g02628
Onchocerca ochengi
nOo.2.0.1.g02628
I
0.868
OFLC_0000076301
Onchocerca flexuosa
OFLC_0000076301
I
0.868
TCLT_0000342401
Thelazia callipaeda
TCLT_0000342401
I
0.868
SMUV_0000835401
Syphacia muris
SMUV_0000835401
I
0.866
L596_g9277
Steinernema carpocapsae
L596_g9277
I
0.865
L889_g25097
Steinernema feltiae
L889_g25097
I
0.865
L892_g186
Steinernema scapterisci
L892_g186
I
0.865
L898_g18440
Steinernema monticolum
L898_g18440
I
0.865
ASIM_0001548701
Anisakis simplex
ASIM_0001548701
I
0.862
L893_g6023
Steinernema glaseri
L893_g6023
I
0.862
TCNE_0000582701
Toxocara canis
TCNE_0000582701
I
0.862
Ppa-nhr-14
Pristionchus pacificus
PPA06980
I
0.860
scaffold1338-EXSNAP2012.3
Pristionchus exspectatus
scaffold1338-EXSNAP2012.3
I
0.860
PTRK_0001591500
Parastrongyloides trichosuri
PTRK_0001591500
I
0.830
SPAL_0001056000
Strongyloides papillosus
SPAL_0001056000
I
0.830
SSTP_0000230100
Strongyloides stercoralis
SSTP_0000230100
I
0.830
SVE_1768400
Strongyloides venezuelensis
SVE_1768400
I
0.830
BXY_0412900
Bursaphelenchus xylophilus
BXY_0412900
I
0.827
CJA19445
Caenorhabditis japonica
CJA19445
I
0.813
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.813
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.813
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.813
HPLM_0000308401
Haemonchus placei
HPLM_0000308401
I
0.813
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.813
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.812
CBN05776
Caenorhabditis brenneri
CBN05776
I
0.812
CRE08264
Caenorhabditis remanei
CRE08264
I
0.812
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.812
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.812
CRE22212
Caenorhabditis remanei
CRE22212
I
0.795
L596_g10816
Steinernema carpocapsae
L596_g10816
I
0.792
L892_g23093
Steinernema scapterisci
L892_g23093
I
0.792
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.789
L898_g32368
Steinernema monticolum
L898_g32368
I
0.789
L889_g2977
Steinernema feltiae
L889_g2977
I
0.785
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.781
L898_g9613
Steinernema monticolum
L898_g9613
I
0.781
L889_g15424
Steinernema feltiae
L889_g15424
I
0.780
L893_g33656
Steinernema glaseri
L893_g33656
I
0.780
ANCCAN_20599
Ancylostoma caninum
ANCCAN_20599
I
0.768
CGOC_0000279901
Cylicostephanus goldi
CGOC_0000279901
I
0.768
OESDEN_00859
Oesophagostomum dentatum
OESDEN_00859
I
0.768
CJA11132
Caenorhabditis japonica
CJA11132
N
0.766
PTRK_0001236400
Parastrongyloides trichosuri
PTRK_0001236400
I
0.765
RSKR_0001175400
Rhabditophanes kr3021
RSKR_0001175400
I
0.762
nhr-21
Caenorhabditis elegans
WBGene00003620
I
0.760
HPBE_0001033901
Heligmosomoides bakeri
HPBE_0001033901
I
0.760
GPLIN_000327200
Globodera pallida
GPLIN_000327200
I
0.759
CBG03466
Caenorhabditis briggsae
CBG03466
I
0.754
CBN28641
Caenorhabditis brenneri
CBN28641
I
0.754
CJA14611
Caenorhabditis japonica
CJA14611
I
0.754
CRE29874
Caenorhabditis remanei
CRE29874
I
0.754
nhr-4
Caenorhabditis elegans
WBGene00003603
I
0.754
ACAC_0000956101
Angiostrongylus cantonensis
ACAC_0000956101
I
0.754
ACOC_0000749401
Angiostrongylus costaricensis
ACOC_0000749401
I
0.754
DICVIV_01644
Dictyocaulus viviparus
DICVIV_01644
I
0.754
HCOI00094500
Haemonchus contortus
HCOI00094500
I
0.754
HCOI01442000
Haemonchus contortus
HCOI01442000
I
0.754
HPBE_0001524301
Heligmosomoides bakeri
HPBE_0001524301
I
0.754
L596_g9904
Steinernema carpocapsae
L596_g9904
I
0.754
L889_g366
Steinernema feltiae
L889_g366
I
0.754
L892_g17832
Steinernema scapterisci
L892_g17832
I
0.754
L893_g5404
Steinernema glaseri
L893_g5404
I
0.754
CJA02727
Caenorhabditis japonica
CJA02727
I
0.753
Ppa-nhr-3
Pristionchus pacificus
PPA28597
I
0.751
scaffold395-EXSNAP2012.23
Pristionchus exspectatus
scaffold395-EXSNAP2012.23
I
0.751
CBG13142
Caenorhabditis briggsae
CBG13142
I
0.747
CBN04415
Caenorhabditis brenneri
CBN04415
I
0.747
CBN32300
Caenorhabditis brenneri
CBN32300
I
0.747
CRE26423
Caenorhabditis remanei
CRE26423
I
0.747