CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CJA39530
(
Caenorhabditis japonica
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CJA39530
T302008_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.916
0.629
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA39530a
Nuclear receptor
22
81
QSCLVCGDPNGKRHYGAMSCNGCKGFFRRSFNNECIIEFKYRNRCRACRLKRCLKVGMDA
CJA39530b
Nuclear receptor
22
91
QSCLVCGDPNGKRHYGAMSCNGCKGFFRRSIWEKRSYKCSFNNECIIEFKYRNRCRACRLKRCLKVGMDA
CJA39530c
Nuclear receptor
22
91
QSCLVCGDPNGKRHYGAMSCNGCKGFFRRSIWEKRSYKCSFNNECIIEFKYRNRCRACRLKRCLKVGMDA
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis japonica
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nhr-100
Caenorhabditis elegans
WBGene00003690
I
0.995
CRE07035
Caenorhabditis remanei
CRE07035
I
0.985
CJA11132
Caenorhabditis japonica
CJA11132
N
0.981
CBG14997
Caenorhabditis briggsae
CBG14997
I
0.978
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.964
CBN00088
Caenorhabditis brenneri
CBN00088
I
0.932
CBN21958
Caenorhabditis brenneri
CBN21958
I
0.932
ASU_00971
Ascaris suum
ASU_00971
I
0.924
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.924
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.924
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.924
NECAME_02375
Necator americanus
NECAME_02375
I
0.922
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.919
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.919
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.918
CJA14248
Caenorhabditis japonica
CJA14248
I
0.918
CRE07033
Caenorhabditis remanei
CRE07033
I
0.918
CRE10779
Caenorhabditis remanei
CRE10779
I
0.918
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.918
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.918
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.916
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.916
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.916
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.916
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.916
L889_g31970
Steinernema feltiae
L889_g31970
I
0.916
L893_g263
Steinernema glaseri
L893_g263
I
0.916
L898_g11608
Steinernema monticolum
L898_g11608
I
0.916
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.916
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.910
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.910
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.910
CRE09416
Caenorhabditis remanei
CRE09416
I
0.905
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.905
BXY_0019500
Bursaphelenchus xylophilus
BXY_0019500
N
0.889
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.885
CRE07034
Caenorhabditis remanei
CRE07034
I
0.883
nhr-138
Caenorhabditis elegans
WBGene00003728
I
0.869
CJA18307
Caenorhabditis japonica
CJA18307
I
0.865
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.854
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.817
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.817
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.817
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.816
CBN05776
Caenorhabditis brenneri
CBN05776
I
0.816
CJA19445
Caenorhabditis japonica
CJA19445
I
0.816
CRE08264
Caenorhabditis remanei
CRE08264
I
0.816
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.816
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.816
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.800
CRE22212
Caenorhabditis remanei
CRE22212
I
0.798
L596_g9904
Steinernema carpocapsae
L596_g9904
I
0.792
L889_g366
Steinernema feltiae
L889_g366
I
0.792
L892_g17832
Steinernema scapterisci
L892_g17832
I
0.792
L893_g5404
Steinernema glaseri
L893_g5404
I
0.792
Ppa-nhr-61
Pristionchus pacificus
PPA27722
I
0.791
L596_g26401
Steinernema carpocapsae
L596_g26401
I
0.781
L889_g16305
Steinernema feltiae
L889_g16305
I
0.781
L892_g17146
Steinernema scapterisci
L892_g17146
I
0.781
L893_g6565
Steinernema glaseri
L893_g6565
I
0.781
L898_g5338
Steinernema monticolum
L898_g5338
I
0.781
BXY_0816300
Bursaphelenchus xylophilus
BXY_0816300
I
0.768
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.766
CBG03466
Caenorhabditis briggsae
CBG03466
I
0.757
CBN28641
Caenorhabditis brenneri
CBN28641
I
0.757
CJA14611
Caenorhabditis japonica
CJA14611
I
0.757
CRE29874
Caenorhabditis remanei
CRE29874
I
0.757
nhr-4
Caenorhabditis elegans
WBGene00003603
I
0.757
ACAC_0000956101
Angiostrongylus cantonensis
ACAC_0000956101
I
0.757
ACOC_0000749401
Angiostrongylus costaricensis
ACOC_0000749401
I
0.757
DICVIV_01644
Dictyocaulus viviparus
DICVIV_01644
I
0.757
HCOI00094500
Haemonchus contortus
HCOI00094500
I
0.757
HCOI01442000
Haemonchus contortus
HCOI01442000
I
0.757
HPBE_0001524301
Heligmosomoides bakeri
HPBE_0001524301
I
0.757
L889_g15424
Steinernema feltiae
L889_g15424
I
0.757
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.757
L893_g33656
Steinernema glaseri
L893_g33656
I
0.757
L898_g9613
Steinernema monticolum
L898_g9613
I
0.757
BXY_0053200
Bursaphelenchus xylophilus
BXY_0053200
I
0.754