CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CJA18307
(
Caenorhabditis japonica
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CJA18307
T301991_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.948
0.643
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA18307
Nuclear receptor
14
83
RRCLVCGDDKASKHYGTVACNGCKGFFRRSVWEKRTYMCVGNDTCEVMQQFRNRCRACRFNKCVQVGMDA
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis japonica
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nhr-138
Caenorhabditis elegans
WBGene00003728
I
0.990
CRE07034
Caenorhabditis remanei
CRE07034
I
0.988
CRE09416
Caenorhabditis remanei
CRE09416
I
0.965
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.955
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.948
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.948
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.947
CRE07033
Caenorhabditis remanei
CRE07033
I
0.947
CRE10779
Caenorhabditis remanei
CRE10779
I
0.947
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.947
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.947
NECAME_02375
Necator americanus
NECAME_02375
I
0.946
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.945
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.945
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.945
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.945
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.942
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.942
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.941
ASU_00971
Ascaris suum
ASU_00971
I
0.936
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.936
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.936
L889_g31970
Steinernema feltiae
L889_g31970
I
0.936
L893_g263
Steinernema glaseri
L893_g263
I
0.936
L898_g11608
Steinernema monticolum
L898_g11608
I
0.936
CJA14248
Caenorhabditis japonica
CJA14248
I
0.935
CRE07035
Caenorhabditis remanei
CRE07035
I
0.925
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.920
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.920
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.920
CBN00088
Caenorhabditis brenneri
CBN00088
I
0.917
CBN21958
Caenorhabditis brenneri
CBN21958
I
0.917
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.915
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.902
CBG14997
Caenorhabditis briggsae
CBG14997
I
0.890
nhr-100
Caenorhabditis elegans
WBGene00003690
I
0.874
CJA39530
Caenorhabditis japonica
CJA39530
I
0.865
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.854
scaffold488-EXSNAP2012.17
Pristionchus exspectatus
scaffold488-EXSNAP2012.17
I
0.850
BXY_0412900
Bursaphelenchus xylophilus
BXY_0412900
I
0.842
L889_g15424
Steinernema feltiae
L889_g15424
I
0.837
L893_g33656
Steinernema glaseri
L893_g33656
I
0.837
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.834
L898_g9613
Steinernema monticolum
L898_g9613
I
0.834
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.830
CJA02727
Caenorhabditis japonica
CJA02727
I
0.829
CBG13142
Caenorhabditis briggsae
CBG13142
I
0.823
CBN04415
Caenorhabditis brenneri
CBN04415
I
0.823
CBN32300
Caenorhabditis brenneri
CBN32300
I
0.823
CRE26423
Caenorhabditis remanei
CRE26423
I
0.823
Ppa-nhr-3
Pristionchus pacificus
PPA28597
I
0.817
scaffold395-EXSNAP2012.23
Pristionchus exspectatus
scaffold395-EXSNAP2012.23
I
0.817
nhr-21
Caenorhabditis elegans
WBGene00003620
I
0.792
L596_g10816
Steinernema carpocapsae
L596_g10816
I
0.789
L892_g23093
Steinernema scapterisci
L892_g23093
I
0.789
L898_g32368
Steinernema monticolum
L898_g32368
I
0.786
L889_g2977
Steinernema feltiae
L889_g2977
I
0.785
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.778
CBN05776
Caenorhabditis brenneri
CBN05776
I
0.778
CJA19445
Caenorhabditis japonica
CJA19445
I
0.778
CRE08264
Caenorhabditis remanei
CRE08264
I
0.778
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.778
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.778
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.778
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.778
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.778
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.778
CJA06107
Caenorhabditis japonica
CJA06107
I
0.764
nhr-61
Caenorhabditis elegans
WBGene00003651
I
0.764
Ppa-nhr-61
Pristionchus pacificus
PPA27722
I
0.749
genemark-nMf.1.1.scaf02603-processed-gene-0.3
Meloidogyne floridensis
genemark-nMf.1.1.scaf02603-processed-gene-0.3
I
0.747