CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-138
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003728
T306250_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.950
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C28D4.9
Nuclear receptor
13
82
RRCLVCGDDKASRHYGTVACNGCKGFFRRSVWEKRTYFCIANEDCEVLQQFRNRCRACRFNKCVMVGMDA
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CJA18307
Caenorhabditis japonica
CJA18307
I
0.990
CRE07034
Caenorhabditis remanei
CRE07034
I
0.983
CRE09416
Caenorhabditis remanei
CRE09416
I
0.966
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.958
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.950
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.950
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.950
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.950
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.949
CRE07033
Caenorhabditis remanei
CRE07033
I
0.949
CRE10779
Caenorhabditis remanei
CRE10779
I
0.949
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.948
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.948
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.948
NECAME_02375
Necator americanus
NECAME_02375
I
0.948
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.948
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.945
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.945
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.943
ASU_00971
Ascaris suum
ASU_00971
I
0.939
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.939
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.939
L889_g31970
Steinernema feltiae
L889_g31970
I
0.939
L893_g263
Steinernema glaseri
L893_g263
I
0.939
L898_g11608
Steinernema monticolum
L898_g11608
I
0.939
CJA14248
Caenorhabditis japonica
CJA14248
I
0.937
CBN00088
Caenorhabditis brenneri
CBN00088
I
0.924
CBN21958
Caenorhabditis brenneri
CBN21958
I
0.924
CRE07035
Caenorhabditis remanei
CRE07035
I
0.924
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.923
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.923
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.923
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.918
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.906
CBG14997
Caenorhabditis briggsae
CBG14997
I
0.892
nhr-100
Caenorhabditis elegans
WBGene00003690
I
0.877
CJA39530
Caenorhabditis japonica
CJA39530
I
0.869
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.856
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.848
L898_g9613
Steinernema monticolum
L898_g9613
I
0.848
L889_g15424
Steinernema feltiae
L889_g15424
I
0.847
L893_g33656
Steinernema glaseri
L893_g33656
I
0.847
BXY_0412900
Bursaphelenchus xylophilus
BXY_0412900
I
0.845
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.845
Ppa-nhr-3
Pristionchus pacificus
PPA28597
I
0.843
scaffold395-EXSNAP2012.23
Pristionchus exspectatus
scaffold395-EXSNAP2012.23
I
0.843
CJA02727
Caenorhabditis japonica
CJA02727
I
0.835
CBG13142
Caenorhabditis briggsae
CBG13142
I
0.829
CBN04415
Caenorhabditis brenneri
CBN04415
I
0.829
CBN32300
Caenorhabditis brenneri
CBN32300
I
0.829
CRE26423
Caenorhabditis remanei
CRE26423
I
0.829
nhr-21
Caenorhabditis elegans
WBGene00003620
I
0.798
scaffold488-EXSNAP2012.17
Pristionchus exspectatus
scaffold488-EXSNAP2012.17
I
0.797
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.786
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.786
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.786
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.786
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.785
CBN05776
Caenorhabditis brenneri
CBN05776
I
0.785
CJA19445
Caenorhabditis japonica
CJA19445
I
0.785
CRE08264
Caenorhabditis remanei
CRE08264
I
0.785
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.785
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.785
L596_g10816
Steinernema carpocapsae
L596_g10816
I
0.778
L892_g23093
Steinernema scapterisci
L892_g23093
I
0.778
L889_g2977
Steinernema feltiae
L889_g2977
I
0.777
L898_g32368
Steinernema monticolum
L898_g32368
I
0.775
CJA06107
Caenorhabditis japonica
CJA06107
I
0.762
nhr-61
Caenorhabditis elegans
WBGene00003651
I
0.762
Ppa-nhr-61
Pristionchus pacificus
PPA27722
I
0.757
L596_g9904
Steinernema carpocapsae
L596_g9904
I
0.747
L889_g366
Steinernema feltiae
L889_g366
I
0.747
L892_g17832
Steinernema scapterisci
L892_g17832
I
0.747
L893_g5404
Steinernema glaseri
L893_g5404
I
0.747