Afo_R010444 (Aptenodytes forsteri)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 Afo_R010444 T322120_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.994 0.987
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.992 0.947
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.992 0.947
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.992 0.947
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.992 0.947
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.992 0.947
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.992 0.947
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.992 0.947
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.992 0.960
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.988 0.787
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.988 0.787
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.988 0.773
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.988 0.773
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.988 0.773
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.988 0.773
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.988 0.773
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.984 0.747
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.984 0.733
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.959 0.640
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R010444 SAND 87 162

Links

Other SAND family TFs
Other Aptenodytes forsteri TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.000
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.000
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.000
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.000
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.000
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.000
ASIL2 Arabidopsis thaliana AT3G14180 D 0.000
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.000
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.000
Bo5g136850 Brassica oleracea Bo5g136850 I 0.000
Bo9g177060 Brassica oleracea Bo9g177060 I 0.000
Bra034165 Brassica rapa Bra034165 I 0.000
Bra034866 Brassica rapa Bra034866 I 0.000
PK22475.1 Cannabis sativa PK22475.1 N 0.000
PK20477.1 Cannabis sativa PK20477.1 N 0.000
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.000
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.000
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.000
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.000
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.000
Cla015773 Citrullus lanatus Cla015773 I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.000
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.000
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.000
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.000
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.000
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.000
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.000
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.000
MDP0000097759 Malus domestica MDP0000097759 N 0.000
MDP0000255104 Malus domestica MDP0000255104 I 0.000
MDP0000281471 Malus domestica MDP0000281471 I 0.000
MDP0000943251 Malus domestica MDP0000943251 N 0.000
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.000
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.000
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.000
mgf006505m Mimulus guttatus mgf006505m I 0.000
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.000
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.000
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.000
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.000
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.000
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.000
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.000
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.000
Pm013209 Prunus mume Pm013209 I 0.000
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.000
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.000
29727.m000472 Ricinus communis 29727.m000472 I 0.000
29814.m000741 Ricinus communis 29814.m000741 I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.000
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.000
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.000
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.000
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.000
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.000
TCM_029209 Theobroma cacao TCM_029209 I 0.000
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.000
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.000
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.000