Pvit_01323 (Pogona vitticeps)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 Pvit_01323 T322174_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.994 1.000
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.992 0.947
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.992 0.947
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.992 0.947
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.992 0.947
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.992 0.947
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.992 0.947
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.992 0.947
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.991 0.947
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.987 0.773
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.987 0.773
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.987 0.760
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.987 0.760
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.987 0.760
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.987 0.760
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.987 0.760
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.983 0.733
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.983 0.720
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.954 0.627
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_01323 SAND 88 163

Links

Other SAND family TFs
Other Pogona vitticeps TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.000
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.000
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.000
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.000
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.000
Bo9g177060 Brassica oleracea Bo9g177060 I 0.000
Bra009119 Brassica rapa Bra009119 I 0.000
Bra034165 Brassica rapa Bra034165 I 0.000
Bra034866 Brassica rapa Bra034866 I 0.000
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.000
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.000
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.000
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.000
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.000
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.000
MDP0000943251 Malus domestica MDP0000943251 N 0.000
MDP0000097759 Malus domestica MDP0000097759 N 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.000
mgf006505m Mimulus guttatus mgf006505m I 0.000
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.000
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.000
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.000
29814.m000741 Ricinus communis 29814.m000741 I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.000
Si010246m.g Setaria italica Si010246m.g N 0.000
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.000
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.000
Sb06g017920 Sorghum bicolor Sb06g017920 N 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.000
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.000
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.000
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.000
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.000