fgenesh2_pg.scaffold_177000008 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_177000008 T334146_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_177000008 Sox 172 240

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N 0.615
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I 0.666
ENSAPLG00000003986 Anas platyrhynchos ENSAPLG00000003986 N 0.419
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.484
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.484
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.484
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.484
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.484
ASIM_0000224701 Anisakis simplex ASIM_0000224701 N 0.435
ASIM_0001958001 Anisakis simplex ASIM_0001958001 N 0.627
AALB006415 Anopheles albimanus AALB006415 I 0.671
AALB009551 Anopheles albimanus AALB009551 N 0.420
AARA010616 Anopheles arabiensis AARA010616 I 0.671
AATE016215 Anopheles atroparvus AATE016215 I 0.671
ACUA004409 Anopheles culicifacies ACUA004409 I 0.671
ADAC003252 Anopheles darlingi ADAC003252 I 0.671
ADAC005840 Anopheles darlingi ADAC005840 N 0.420
AEPI009418 Anopheles epiroticus AEPI009418 N 0.420
AEPI010254 Anopheles epiroticus AEPI010254 N 0.498
AFAF011136 Anopheles farauti AFAF011136 I 0.671
AFUN005717 Anopheles funestus AFUN005717 N 0.496
AGAP000281 Anopheles gambiae AGAP000281 I 0.671
AMAM014030 Anopheles maculatus AMAM014030 N 0.498
AMAM022417 Anopheles maculatus AMAM022417 N 0.420
AMEC012857 Anopheles melas AMEC012857 I 0.671
AMEM006878 Anopheles merus AMEM006878 I 0.671
AMIN005634 Anopheles minimus AMIN005634 N 0.504
ASIS016667 Anopheles sinensis ASIS016667 I 0.671
ASTEI07799 Anopheles stephensi ASTEI07799 I 0.671
ASTEI10740 Anopheles stephensi ASTEI10740 N 0.420
GB43084 Apis mellifera GB43084 I 0.690
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.415
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N 0.495
ASU_00726 Ascaris suum ASU_00726 N 0.495
ACEP19638 Atta cephalotes ACEP19638 I 0.593
BGIBMGA006848 Bombyx mori BGIBMGA006848 I 0.698
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N 0.741
Bm4188 Brugia malayi Bm4188 N 0.615
BTMF_0001006201 Brugia timori BTMF_0001006201 I 0.553
CBN07735 Caenorhabditis brenneri CBN07735 N 0.427
CBN31697 Caenorhabditis brenneri CBN31697 N 0.427
CBG11867 Caenorhabditis briggsae CBG11867 N 0.427
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.427
CJA03316 Caenorhabditis japonica CJA03316 N 0.427
CJA30740 Caenorhabditis japonica CJA30740 N 0.427
CRE14258 Caenorhabditis remanei CRE14258 N 0.427
Cflo_00230--XP_624018.2_APIME Camponotus floridanus Cflo_00230--XP_624018.2_APIME N 0.655
CLEC001918 Cimex lectularius CLEC001918 I 0.671
ENSCING00000009516 Ciona intestinalis ENSCING00000009516 N 0.678
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N 0.684
CGI_10017717 Crassostrea gigas CGI_10017717 I 0.696
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.498
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.498
KGM_14572 Danaus plexippus KGM_14572 I 0.698
tox4b Danio rerio ENSDARG00000100163 I 0.706
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I 0.698
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.484
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N 0.615
DME_0000632401 Dracunculus medinensis DME_0000632401 N 0.521
GH14874 Drosophila grimshawi FBgn0122349 N 0.427
GJ12991 Drosophila virilis FBgn0200225 N 0.436
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N 0.615
EDI_340970 Entamoeba dispar EDI_340970 N 0.445
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.503
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.733
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.723
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I 0.680
tox2 Gasterosteus aculeatus ENSGACG00000006914 N 0.733
tox4a Gasterosteus aculeatus ENSGACG00000014107 I 0.698
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N 0.609
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I 0.699
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.484
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.484
HHAL000823-PA Halyomorpha halys HHAL000823-PA I 0.671
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.532
HMEL005034 Heliconius melpomene HMEL005034 I 0.698
HelroG145107 Helobdella robusta HelroG145107 N 0.687
ISCW015985 Ixodes scapularis ISCW015985 N 0.685
ISCW018867 Ixodes scapularis ISCW018867 I 0.671
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N 0.587
LOAG_18151 Loa loa LOAG_18151 N 0.615
LotgiG109021 Lottia gigantea LotgiG109021 I 0.694
LCUP006200 Lucilia cuprina LCUP006200 N 0.595
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.546
ENSMMUG00000014077 Macaca mulatta ENSMMUG00000014077 N 0.678
MESCA003479 Megaselia scalaris MESCA003479 N 0.473
MCINX005468 Melitaea cinxia MCINX005468 I 0.698
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.436
Minc06622 Meloidogyne incognita Minc06622 N 0.436
estExt_fgeneshMC_pg.C_20910 Mucor circinelloides estExt_fgeneshMC_pg.C_20910 I 0.483
fgeneshMC_pg.1_#_1771 Mucor circinelloides fgeneshMC_pg.1_#_1771 I 0.519
fgeneshMC_pg.3_#_1190 Mucor circinelloides fgeneshMC_pg.3_#_1190 I 0.421
MDOA008605 Musca domestica MDOA008605 N 0.654
Myotis_brandtii_DAP3_10031965 Myotis brandtii Myotis_brandtii_DAP3_10031965 N 0.449
NV10488 Nasonia vitripennis NV10488 I 0.698
NECAME_01599 Necator americanus NECAME_01599 N 0.484
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.667
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.484
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N 0.597
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N 0.597
WBGene00236865 Onchocerca volvulus WBGene00236865 N 0.597
ENSONIG00000000284 Oreochromis niloticus ENSONIG00000000284 N 0.712
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N 0.735
tox2 Oryzias latipes ENSORLG00000004818 N 0.733
tox4b Oryzias latipes ENSORLG00000008779 N 0.712
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.439
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.416
PHUM393920 Pediculus humanus PHUM393920 N 0.442
e_gw1.30.104.1 Phycomyces blakesleeanus e_gw1.30.104.1 N 0.426
gw1.16.190.1 Phycomyces blakesleeanus gw1.16.190.1 N 0.442
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N 0.712
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N 0.733
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.484
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.415
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N 0.501
RO3G_05222 Rhizopus oryzae RO3G_05222 N 0.497
RO3G_07013 Rhizopus oryzae RO3G_07013 I 0.495
RO3G_15755 Rhizopus oryzae RO3G_15755 I 0.448
RO3G_16060 Rhizopus oryzae RO3G_16060 I 0.434
RPRC000650 Rhodnius prolixus RPRC000650 I 0.671
nRc.2.0.1.g21669 Romanomermis culicivorax nRc.2.0.1.g21669 N 0.473
nRc.2.0.1.g36724 Romanomermis culicivorax nRc.2.0.1.g36724 N 0.431
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N 0.630
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N 0.692
SAPIO_CDS3355 Scedosporium apiospermum SAPIO_CDS3355 I 0.415
SMU15029818 Schmidtea mediterranea SMU15029818 I 0.588
TOX2 Sorex araneus ENSSARG00000001080 N 0.539
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.427
L596_g21045 Steinernema carpocapsae L596_g21045 I 0.442
L889_g13125 Steinernema feltiae L889_g13125 N 0.474
L892_g13433 Steinernema scapterisci L892_g13433 I 0.440
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N 0.679
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.416
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.416
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.416
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.484
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.733
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.733
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.545
tox4b Takifugu rubripes ENSTRUG00000002594 N 0.712
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.733
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.484
TTHERM_00216040 Tetrahymena thermophila TTHERM_00216040 N 0.513
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.462
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.462
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.450
tox4b Tetraodon nigroviridis ENSTNIG00000003691 N 0.712
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N 0.733
TCLT_0000844001 Thelazia callipaeda TCLT_0000844001 N 0.500
TCNE_0000652201 Toxocara canis TCNE_0000652201 N 0.502
TC012723 Tribolium castaneum TC012723 I 0.698
D917_02150 Trichinella nativa D917_02150 N 0.692
EFV52201 Trichinella spiralis EFV52201 N 0.498
EFV61455 Trichinella spiralis EFV61455 N 0.692
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N 0.645
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I 0.673
D918_03887 Trichuris suis D918_03887 N 0.498
D918_09264 Trichuris suis D918_09264 N 0.645
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N 0.645
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I 0.673
WUBG_03914 Wuchereria bancrofti WUBG_03914 N 0.615
tox4.S Xenopus laevis XB-GENE-993810 I 0.706
XP_002936155 Xenopus tropicalis XP_002936155 N 0.741
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.659
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N 0.733
L798_00437 Zootermopsis nevadensis L798_00437 N 0.504