e_gw1.8.279.1 (Sporobolomyces roseus)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 e_gw1.8.279.1 T343110_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.898 0.898
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.898 0.898
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.898 0.898
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.802 0.802
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.802 0.802
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.802 0.802
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.802 0.802
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.802 0.802
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.802 0.802
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.802 0.802
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.802 0.802
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.802 0.802
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.802 0.802
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.8.279.1 TBP 79 161
e_gw1.8.279.1 TBP 169 252

Links

Other TBP family TFs
Other Sporobolomyces roseus TFs

750 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
CBN21486 Caenorhabditis brenneri CBN21486 I
CBN28290 Caenorhabditis brenneri CBN28290 I
CBG09320 Caenorhabditis briggsae CBG09320 I
nhr-218 Caenorhabditis elegans WBGene00011750 I
nhr-142 Caenorhabditis elegans WBGene00018430 D
nhr-213 Caenorhabditis elegans WBGene00011520 I
CJA28065 Caenorhabditis japonica CJA28065 I
CRE31070 Caenorhabditis remanei CRE31070 I
HCOI00483700 Haemonchus contortus HCOI00483700 I
HCOI01190000 Haemonchus contortus HCOI01190000 I
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I
L596_g14533 Steinernema carpocapsae L596_g14533 I
L596_g14590 Steinernema carpocapsae L596_g14590 I
L596_g14541 Steinernema carpocapsae L596_g14541 N
L596_g14537 Steinernema carpocapsae L596_g14537 I
L596_g14536 Steinernema carpocapsae L596_g14536 I
L596_g14532 Steinernema carpocapsae L596_g14532 I
L889_g8187 Steinernema feltiae L889_g8187 I
L889_g6804 Steinernema feltiae L889_g6804 I
L889_g6799 Steinernema feltiae L889_g6799 I
L889_g6797 Steinernema feltiae L889_g6797 I
L889_g6792 Steinernema feltiae L889_g6792 I
L889_g6694 Steinernema feltiae L889_g6694 I
L889_g6695 Steinernema feltiae L889_g6695 I
L889_g6798 Steinernema feltiae L889_g6798 I
L893_g18993 Steinernema glaseri L893_g18993 I
L893_g27935 Steinernema glaseri L893_g27935 N
L893_g27943 Steinernema glaseri L893_g27943 N
L898_g19014 Steinernema monticolum L898_g19014 I
L898_g4018 Steinernema monticolum L898_g4018 N
L898_g4015 Steinernema monticolum L898_g4015 N
L898_g4012 Steinernema monticolum L898_g4012 I
L898_g3515 Steinernema monticolum L898_g3515 I
L898_g32142 Steinernema monticolum L898_g32142 N
L898_g2944 Steinernema monticolum L898_g2944 N
L898_g2943 Steinernema monticolum L898_g2943 N
L898_g20180 Steinernema monticolum L898_g20180 I
L898_g19019 Steinernema monticolum L898_g19019 I
L898_g19012 Steinernema monticolum L898_g19012 I
L898_g12799 Steinernema monticolum L898_g12799 I
L892_g14818 Steinernema scapterisci L892_g14818 I
L892_g14817 Steinernema scapterisci L892_g14817 I
L892_g10843 Steinernema scapterisci L892_g10843 I
L892_g10842 Steinernema scapterisci L892_g10842 I
L892_g10840 Steinernema scapterisci L892_g10840 N
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I