BGIOSGA020173 (Oryza indica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 BGIOSGA020173 T343710_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.941 0.500
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.939 0.500
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.922 0.491
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.901 0.440
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.894 0.448
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.894 0.448
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.885 0.466
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.885 0.466
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.884 0.414
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.884 0.414
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.884 0.414
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.881 0.457
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.881 0.457
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.872 0.414
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.872 0.414
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.859 0.422
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA020173-PA TCP 74 227

Links

Other TCP family TFs
Other Oryza indica TFs

430 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.000
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.000
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.000
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.000
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.000
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.000
BIM3 Arabidopsis lyrata scaffold_704174.1 I 0.000
BIM2 Arabidopsis thaliana AT1G69010 D 0.000
BIM1 Arabidopsis thaliana AT5G08130 D 0.000
BIM3 Arabidopsis thaliana AT5G38860 D 0.000
ALC Arabidopsis thaliana AT5G67110 I 0.000
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.000
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.000
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.000
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.000
Bo2g062560 Brassica oleracea Bo2g062560 I 0.000
Bo2g161110 Brassica oleracea Bo2g161110 I 0.000
Bo3g004690 Brassica oleracea Bo3g004690 I 0.000
Bo5g020460 Brassica oleracea Bo5g020460 I 0.000
Bo6g108530 Brassica oleracea Bo6g108530 I 0.000
Bo9g174770 Brassica oleracea Bo9g174770 I 0.000
Bra004355 Brassica rapa Bra004355 I 0.000
Bra005969 Brassica rapa Bra005969 I 0.000
Bra009322 Brassica rapa Bra009322 I 0.000
Bra012133 Brassica rapa Bra012133 I 0.000
Bra029354 Brassica rapa Bra029354 I 0.000
Bra038332 Brassica rapa Bra038332 I 0.000
PK00238.1 Cannabis sativa PK00238.1 I 0.000
PK01364.1 Cannabis sativa PK01364.1 I 0.000
PK10562.1 Cannabis sativa PK10562.1 I 0.000
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.000
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.000
Cagra.2539s0002 Capsella grandiflora Cagra.2539s0002 I 0.000
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.000
Carubv10006445m.g Capsella rubella Carubv10006445m.g I 0.000
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.000
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.000
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.000
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.000
Ca_19269 Cicer arietinum Ca_19269 I 0.000
Ca_22043 Cicer arietinum Ca_22043 I 0.000
Cla018818 Citrullus lanatus Cla018818 I 0.000
Cla022382 Citrullus lanatus Cla022382 I 0.000
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.000
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.000
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.000
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.000
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.000
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.000
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.000
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.000
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.000
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.000
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.000
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.000
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.000
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.000
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.000
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.000
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.000
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.000
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.000
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.000
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.000
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.000
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.000
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.000
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.000
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.000
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.000
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.000
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.000
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.000
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.000
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.000
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.000
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.000
MDP0000261293 Malus domestica MDP0000261293 I 0.000
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.000
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.000
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.000
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.000
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.000
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.000
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.000
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.000
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.000
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.000
mgf001137m Mimulus guttatus mgf001137m I 0.000
mgf005849m Mimulus guttatus mgf005849m I 0.000
mgf011829m Mimulus guttatus mgf011829m I 0.000
mgf013208m Mimulus guttatus mgf013208m I 0.000
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.000
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.000
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.000
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.000
OBART06G04330 Oryza barthii OBART06G04330 I 0.000
OB08G25940 Oryza brachyantha OB08G25940 I 0.000
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.000
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.000
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.000
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.000
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.000
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.000
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.000
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.000
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.000
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.000
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.000
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.000
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.000
OS08G0490000 Oryza sativa OS08G0490000 I 0.000
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.000
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.000
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.000
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.000
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.000
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.000
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.000
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.000
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.000
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.000
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.000
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.000
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.000
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.000
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.000
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.000
29790.m000843 Ricinus communis 29790.m000843 I 0.000
30138.m003899 Ricinus communis 30138.m003899 I 0.000
30138.m003913 Ricinus communis 30138.m003913 I 0.000
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.000
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.000
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.000
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.000
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.000
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.000
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.000
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
Si013622m.g Setaria italica Si013622m.g I 0.000
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.000
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.000
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.000
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.000
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.000
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.000
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.000
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.000
TCM_011433 Theobroma cacao TCM_011433 I 0.000
TCM_014392 Theobroma cacao TCM_014392 I 0.000
TCM_019015 Theobroma cacao TCM_019015 I 0.000
Traes_7DL_04FC0BF21 Triticum aestivum Traes_7DL_04FC0BF21 N 0.000
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.000
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.000
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.000
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000