EFV59390 (Trichinella spiralis)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 EFV59390 T345264_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.741
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.724
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.707
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.707
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.690
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.690
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.690
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.672
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.534
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.500
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.500
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.500
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.500
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.500
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.500
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.483
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.483
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.483
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.483
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.483
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.483
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.483
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.466
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.466
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.466
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.466
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.448
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.414
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFV59390 TCR/CxC 55 91
EFV59390 TCR/CxC 143 163

Links

Other TCR/CxC family TFs
Other Trichinella spiralis TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I
BRC2 Arabidopsis thaliana AT1G68800 I
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I
PK12240.1 Cannabis sativa PK12240.1 D
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I
Carubv10020487m.g Capsella rubella Carubv10020487m.g I
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I
Cucsa.280880 Cucumis sativus Cucsa.280880 I
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I
MLOC_70116 Hordeum vulgare MLOC_70116 I
LPERR03G25950 Leersia perrieri LPERR03G25950 I
Lus10021713.g Linum usitatissimum Lus10021713.g I
Lus10035055.g Linum usitatissimum Lus10035055.g I
MDP0000173048 Malus domestica MDP0000173048 I
MDP0000272980 Malus domestica MDP0000272980 I
cassava16230.m1 Manihot esculenta cassava16230.m1 I
mgf024687m Mimulus guttatus mgf024687m I
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I
OBART03G31290 Oryza barthii OBART03G31290 I
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I
BGIOSGA013417 Oryza indica BGIOSGA013417 I
OMERI03G27910 Oryza meridionalis OMERI03G27910 I
ONIVA03G32600 Oryza nivara ONIVA03G32600 I
OPUNC03G28490 Oryza punctata OPUNC03G28490 I
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I
TB1 Oryza sativa OS03G0706500 D
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I
Pm029002 Prunus mume Pm029002 I
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I
29738.m001041 Ricinus communis 29738.m001041 I
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I
Si038692m.g Setaria italica Si038692m.g I
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I
Sb01g010690 Sorghum bicolor Sb01g010690 I
TCM_011874 Theobroma cacao TCM_011874 I
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I
TRIUR3_31795 Triticum urartu TRIUR3_31795 I
AC233950.1_FG002 Zea mays AC233950.1_FG002 I