CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh_scip_prom.46568.9633
(
Phytophthora kernoviae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
fgenesh_scip_prom.46568.9633
T117422_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh_scip_prom.46568.9633
C2H2 ZF
46
70
HHCTEPGCIRRFSRKYTLIEHMKTH
fgenesh_scip_prom.46568.9633
C2H2 ZF
76
100
HVCPVKTCGKRFSTSGNLSRHKRLH
fgenesh_scip_prom.46568.9633
C2H2 ZF
106
130
LECPVEGCLSSFPSNNKLEKHMKFH
fgenesh_scip_prom.46568.9633
C2H2 ZF
136
161
QVCTIDHCGKTFSTTGNLNRHVKHQH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora kernoviae
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh_scip_prom.28083.660
Phytophthora lateralis
fgenesh_scip_prom.28083.660
N
0.815
Phyra76423
Phytophthora ramorum
Phyra76423
N
0.812
F443_10160
Phytophthora parasitica
F443_10160
N
0.785
e_gw1.2.501.1
Phytophthora capsici
e_gw1.2.501.1
N
0.785
F443_10168
Phytophthora parasitica
F443_10168
N
0.781
snap_masked-pve_contig_11-abinit-gene-0.108
Pythium vexans
snap_masked-pve_contig_11-abinit-gene-0.108
N
0.776
Physo128916
Phytophthora sojae
Physo128916
N
0.776
maker-pir_contig_723-snap-gene-0.9
Pythium irregulare
maker-pir_contig_723-snap-gene-0.9
N
0.774
Physo128919
Phytophthora sojae
Physo128919
N
0.773
PYU1_G008756
Pythium ultimum
PYU1_G008756
N
0.772
fgenesh_scip_prom.28083.9722
Phytophthora lateralis
fgenesh_scip_prom.28083.9722
N
0.771
Phyra76421
Phytophthora ramorum
Phyra76421
N
0.771
e_gw1.1936.1.1
Phytophthora capsici
e_gw1.1936.1.1
N
0.771
PYU1_G008749
Pythium ultimum
PYU1_G008749
N
0.767
Phyra76424
Phytophthora ramorum
Phyra76424
N
0.767
F443_10169
Phytophthora parasitica
F443_10169
N
0.767
fgenesh_scip_prom.28083.659
Phytophthora lateralis
fgenesh_scip_prom.28083.659
N
0.767
fgenesh_scip_prom.46568.9634
Phytophthora kernoviae
fgenesh_scip_prom.46568.9634
N
0.767
maker-pir_contig_2201-fgenesh-gene-0.0
Pythium irregulare
maker-pir_contig_2201-fgenesh-gene-0.0
N
0.764
PYU1_G008755
Pythium ultimum
PYU1_G008755
N
0.764
e_gw1.34.40.1
Phytophthora capsici
e_gw1.34.40.1
N
0.763
PYU1_G008748
Pythium ultimum
PYU1_G008748
N
0.763
e_gw1.34.32.1
Phytophthora capsici
e_gw1.34.32.1
N
0.762
PYU1_G008757
Pythium ultimum
PYU1_G008757
N
0.759
F443_10163
Phytophthora parasitica
F443_10163
N
0.759