Bra029889 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra029889 T001198_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.733 0.860
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.733 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029889.1-P AP2 79 130

Links

Other AP2 family TFs
Other Brassica rapa TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g136930 Brassica oleracea Bo5g136930 I 0.813
Bo1g141310 Brassica oleracea Bo1g141310 I 0.784
Bra034159 Brassica rapa Bra034159 I 0.774
Bra001386 Brassica rapa Bra001386 I 0.760
Bo3g063910 Brassica oleracea Bo3g063910 I 0.758
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.742
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.739
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.739
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.739
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.735
DREB2A Arabidopsis thaliana AT5G05410 D 0.733
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.729
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.729
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.729
Bra028759 Brassica rapa Bra028759 I 0.721
Bo2g006960 Brassica oleracea Bo2g006960 I 0.721
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.717
Bra005852 Brassica rapa Bra005852 I 0.716
DREB2B Arabidopsis thaliana AT3G11020 I 0.680