Bra001386 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra001386 T000986_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.731 0.840
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.731 0.840
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.677 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001386.1-P AP2 70 121

Links

Other AP2 family TFs
Other Brassica rapa TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g063910 Brassica oleracea Bo3g063910 I 0.813
Bra034159 Brassica rapa Bra034159 I 0.800
Bo1g141310 Brassica oleracea Bo1g141310 I 0.790
Bo5g136930 Brassica oleracea Bo5g136930 I 0.760
Bra029889 Brassica rapa Bra029889 I 0.760
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.751
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.744
Bra005852 Brassica rapa Bra005852 I 0.744
Bra028759 Brassica rapa Bra028759 I 0.738
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.738
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.738
Bo2g006960 Brassica oleracea Bo2g006960 I 0.738
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.737
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.737
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.737
DREB2A Arabidopsis thaliana AT5G05410 D 0.731
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.728
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.724
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.687
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.687
F775_32062 Aegilops tauschii F775_32062 I 0.687
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.687
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.683
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.679
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.679
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.679
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.678
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.677
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.677
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.677