CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA18G48741
(
Glycine max
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GLYMA18G48741
T002030_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.720
0.735
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.695
0.776
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.695
0.776
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.695
0.776
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.689
0.755
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.689
0.755
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD
HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.689
0.755
ERF1B
M09703_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.689
0.755
ERF1B
M09704_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.689
0.755
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.679
0.673
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.679
0.673
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.679
0.673
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA18G48741.1
AP2
65
117
RRYRGVRRRPWGKFAAEIRDPKKNGSRVWLGTYVNEEEAALAYDKAAFNMRGQ
Links
Other
AP2
family TFs
Other
Glycine max
TFs
202 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_06034
Cicer arietinum
Ca_06034
I
0.783
MTR_7g081795
Medicago truncatula
MTR_7g081795
I
0.782
MTR_7g081805
Medicago truncatula
MTR_7g081805
I
0.775
Ca_06032
Cicer arietinum
Ca_06032
I
0.775
MTR_7g081815
Medicago truncatula
MTR_7g081815
I
0.775
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.755
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.743
GLYMA10G33070
Glycine max
GLYMA10G33070
I
0.740
GLYMA20G34560
Glycine max
GLYMA20G34560
I
0.740
MTR_8g006825
Medicago truncatula
MTR_8g006825
I
0.739
MTR_1g074310
Medicago truncatula
MTR_1g074310
I
0.734
GLYMA10G00990
Glycine max
GLYMA10G00990
I
0.731
LjSGA_078116.1
Lotus japonicus
LjSGA_078116.1
I
0.726
chr3.CM0080.80.nd
Lotus japonicus
chr3.CM0080.80.nd
I
0.726
Ca_12080
Cicer arietinum
Ca_12080
I
0.724
Carubv10005868m.g
Capsella rubella
Carubv10005868m.g
I
0.721
Cagra.4714s0001
Capsella grandiflora
Cagra.4714s0001
I
0.721
Carubv10015406m.g
Capsella rubella
Carubv10015406m.g
I
0.720
ERF098
Arabidopsis thaliana
AT3G23230
D
0.720
Cagra.8559s0002
Capsella grandiflora
Cagra.8559s0002
I
0.720
Bostr.19424s0320
Boechera stricta
Bostr.19424s0320
I
0.720
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.717
Cla021851
Citrullus lanatus
Cla021851
I
0.717
Eucgr.E01561
Eucalyptus grandis
Eucgr.E01561
I
0.716
Bostr.14547s0008
Boechera stricta
Bostr.14547s0008
I
0.715
scaffold_604310.1
Arabidopsis lyrata
scaffold_604310.1
I
0.713
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.713
Pm017696
Prunus mume
Pm017696
I
0.713
MDP0000830129
Malus domestica
MDP0000830129
I
0.713
TCM_029773
Theobroma cacao
TCM_029773
I
0.713
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.711
Bo9g001020
Brassica oleracea
Bo9g001020
I
0.710
fgenesh2_kg.3__2538__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.3__2538__AT3G23230.1
I
0.710
fgenesh2_kg.471__1__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.471__1__AT3G23230.1
I
0.710
TCM_005707
Theobroma cacao
TCM_005707
I
0.709
MTR_1g070070
Medicago truncatula
MTR_1g070070
I
0.709
GLYMA03G26437
Glycine max
GLYMA03G26437
I
0.708
Thhalv10029212m.g
Eutrema salsugineum
Thhalv10029212m.g
I
0.707
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.707
30174.m008756
Ricinus communis
30174.m008756
I
0.706
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.706
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.705
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.705
cassava41639.m1
Manihot esculenta
cassava41639.m1
I
0.704
GLYMA18G48730
Glycine max
GLYMA18G48730
I
0.704
TCM_005706
Theobroma cacao
TCM_005706
I
0.703
30174.m008755
Ricinus communis
30174.m008755
I
0.703
SapurV1A.0292s0010
Salix purpurea
SapurV1A.0292s0010
I
0.702
MDP0000930655
Malus domestica
MDP0000930655
I
0.702
SapurV1A.0021s0990
Salix purpurea
SapurV1A.0021s0990
I
0.702
cassava19881.m1
Manihot esculenta
cassava19881.m1
I
0.700
GLYMA09G37780
Glycine max
GLYMA09G37780
I
0.700
POPTR_0014s04600
Populus trichocarpa
POPTR_0014s04600
I
0.700
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.699
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.699
LPERR02G21480
Leersia perrieri
LPERR02G21480
I
0.698
cassava19882.m1
Manihot esculenta
cassava19882.m1
I
0.697
Eucgr.G00393
Eucalyptus grandis
Eucgr.G00393
I
0.697
Pm017699
Prunus mume
Pm017699
I
0.697
Eucgr.G00396
Eucalyptus grandis
Eucgr.G00396
I
0.697
Eucgr.G00394
Eucalyptus grandis
Eucgr.G00394
I
0.697
MTR_4g088005
Medicago truncatula
MTR_4g088005
I
0.697
gene21165-v1.0-hybrid
Fragaria vesca
gene21165-v1.0-hybrid
I
0.697
chr3.CM0080.190.nd
Lotus japonicus
chr3.CM0080.190.nd
I
0.697
orange1.1g048608m.g
Citrus sinensis
orange1.1g048608m.g
I
0.696
Pavir.Ab02473
Panicum virgatum
Pavir.Ab02473
I
0.696
GRMZM2G057386
Zea mays
GRMZM2G057386
I
0.696
Si017790m.g
Setaria italica
Si017790m.g
I
0.696
OGLUM02G26870
Oryza glumaepatula
OGLUM02G26870
I
0.696
VIT_07s0005g03190
Vitis vinifera
VIT_07s0005g03190
I
0.696
OMERI02G25780
Oryza meridionalis
OMERI02G25780
I
0.696
Pavir.Aa01181
Panicum virgatum
Pavir.Aa01181
I
0.696
ORUFI02G27860
Oryza rufipogon
ORUFI02G27860
I
0.696
BGIOSGA008740
Oryza indica
BGIOSGA008740
I
0.696
ORGLA02G0226700
Oryza glaberrima
ORGLA02G0226700
I
0.696
OPUNC02G24090
Oryza punctata
OPUNC02G24090
I
0.696
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.696
OBART02G26470
Oryza barthii
OBART02G26470
I
0.696
ONIVA02G28840
Oryza nivara
ONIVA02G28840
I
0.696
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.696
Gorai.007G086000
Gossypium raimondii
Gorai.007G086000
I
0.696
Ciclev10006784m.g
Citrus clementina
Ciclev10006784m.g
I
0.696
Bra004873
Brassica rapa
Bra004873
I
0.695
Bostr.19424s0319
Boechera stricta
Bostr.19424s0319
I
0.695
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.695
Bra037630
Brassica rapa
Bra037630
I
0.695
ERF13
Arabidopsis thaliana
AT2G44840
D
0.695
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.695
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.695
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.695
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.695
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.695
SapurV1A.0012s0890
Salix purpurea
SapurV1A.0012s0890
I
0.694
Lus10029331.g
Linum usitatissimum
Lus10029331.g
I
0.694
cassava38545.m1
Manihot esculenta
cassava38545.m1
I
0.694
POPTR_0004s05100
Populus trichocarpa
POPTR_0004s05100
I
0.694
Eucgr.H03091
Eucalyptus grandis
Eucgr.H03091
I
0.693
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.693
gene08075-v1.0-hybrid
Fragaria vesca
gene08075-v1.0-hybrid
I
0.693
Pm020605
Prunus mume
Pm020605
I
0.693
PRUPE_ppa020642mg
Prunus persica
PRUPE_ppa020642mg
I
0.693
Solyc09g066350.1
Solanum lycopersicum
Solyc09g066350.1
I
0.693
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.693
PGSC0003DMG400010309
Solanum tuberosum
PGSC0003DMG400010309
I
0.693
Lus10030261.g
Linum usitatissimum
Lus10030261.g
I
0.690
Lus10004011.g
Linum usitatissimum
Lus10004011.g
I
0.690
Lus10016212.g
Linum usitatissimum
Lus10016212.g
I
0.690
OS04G0257500
Oryza sativa
OS04G0257500
I
0.689
OLONG_027600
Oryza longistaminata
OLONG_027600
I
0.689
OB04G14270
Oryza brachyantha
OB04G14270
I
0.689
OBART04G05450
Oryza barthii
OBART04G05450
I
0.689
ONIVA04G03680
Oryza nivara
ONIVA04G03680
I
0.689
ORGLA04G0041100
Oryza glaberrima
ORGLA04G0041100
I
0.689
ERF1
Arabidopsis lyrata
scaffold_302806.1
I
0.689
OGLUM04G04620
Oryza glumaepatula
OGLUM04G04620
I
0.689
Bo1g102210
Brassica oleracea
Bo1g102210
I
0.689
Cagra.8559s0001
Capsella grandiflora
Cagra.8559s0001
I
0.689
Eucgr.G00388
Eucalyptus grandis
Eucgr.G00388
I
0.689
Carubv10014553m.g
Capsella rubella
Carubv10014553m.g
I
0.689
BGIOSGA015474
Oryza indica
BGIOSGA015474
I
0.689
ERF1B
Arabidopsis thaliana
AT3G23240
D
0.689
ORUFI04G06330
Oryza rufipogon
ORUFI04G06330
I
0.689
Bra023745
Brassica rapa
Bra023745
I
0.689
Thhalv10022108m.g
Eutrema salsugineum
Thhalv10022108m.g
I
0.689
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.689
Bra023746
Brassica rapa
Bra023746
I
0.689
evm.TU.supercontig_101.15
Carica papaya
evm.TU.supercontig_101.15
I
0.689
TRAES3BF046300130CFD_g
Triticum aestivum
TRAES3BF046300130CFD_g
I
0.688
Thhalv10022374m.g
Eutrema salsugineum
Thhalv10022374m.g
I
0.688
SapurV1A.0233s0380
Salix purpurea
SapurV1A.0233s0380
I
0.688
LPERR04G03550
Leersia perrieri
LPERR04G03550
I
0.688
POPTR_0008s16600
Populus trichocarpa
POPTR_0008s16600
I
0.687
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.687
GLYMA03G26394
Glycine max
GLYMA03G26394
I
0.687
TCM_020870
Theobroma cacao
TCM_020870
I
0.687
Bo7g040810
Brassica oleracea
Bo7g040810
I
0.687
Bra014925
Brassica rapa
Bra014925
I
0.687
mgf021973m
Mimulus guttatus
mgf021973m
I
0.686
Solyc09g089920.1
Solanum lycopersicum
Solyc09g089920.1
I
0.686
PGSC0003DMG400046646
Solanum tuberosum
PGSC0003DMG400046646
I
0.686
Cucsa.260030
Cucumis sativus
Cucsa.260030
I
0.686
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.686
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.686
POPTR_0005s24450
Populus trichocarpa
POPTR_0005s24450
I
0.685
Lus10029318.g
Linum usitatissimum
Lus10029318.g
I
0.685
GLYMA13G18330
Glycine max
GLYMA13G18330
I
0.685
Lus10016224.g
Linum usitatissimum
Lus10016224.g
I
0.685
GLYMA10G04160
Glycine max
GLYMA10G04160
I
0.685
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.684
Lus10021196.g
Linum usitatissimum
Lus10021196.g
I
0.684
Gorai.008G108500
Gossypium raimondii
Gorai.008G108500
I
0.684
Gorai.004G165800
Gossypium raimondii
Gorai.004G165800
I
0.684
PGSC0003DMG400010724
Solanum tuberosum
PGSC0003DMG400010724
I
0.684
Solyc02g077370.1
Solanum lycopersicum
Solyc02g077370.1
I
0.684
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.683
Gorai.007G145700
Gossypium raimondii
Gorai.007G145700
I
0.683
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.683
GLYMA03G26480
Glycine max
GLYMA03G26480
I
0.683
POPTR_0014s04630
Populus trichocarpa
POPTR_0014s04630
I
0.682
Cucsa.260040
Cucumis sativus
Cucsa.260040
I
0.682
TCM_004062
Theobroma cacao
TCM_004062
I
0.682
Cucsa.255320
Cucumis sativus
Cucsa.255320
I
0.682
Eucgr.G00943
Eucalyptus grandis
Eucgr.G00943
I
0.682
Cla021852
Citrullus lanatus
Cla021852
I
0.682
mgf021215m
Mimulus guttatus
mgf021215m
I
0.681
mgf001695m
Mimulus guttatus
mgf001695m
I
0.681
Lus10029333.g
Linum usitatissimum
Lus10029333.g
I
0.681
AMTR_s00021p00185480
Amborella trichopoda
AMTR_s00021p00185480
I
0.680
POPTR_0010s08310
Populus trichocarpa
POPTR_0010s08310
I
0.680
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.680
SapurV1A.0094s0620
Salix purpurea
SapurV1A.0094s0620
I
0.680
SapurV1A.1065s0020
Salix purpurea
SapurV1A.1065s0020
I
0.680
Cla007696
Citrullus lanatus
Cla007696
I
0.680
POPTR_0001s11770
Populus trichocarpa
POPTR_0001s11770
I
0.680
Eucgr.E02651
Eucalyptus grandis
Eucgr.E02651
I
0.679
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.679
VIT_07s0005g03200
Vitis vinifera
VIT_07s0005g03200
I
0.679
GRMZM2G474326
Zea mays
GRMZM2G474326
I
0.679
Eucgr.E03168
Eucalyptus grandis
Eucgr.E03168
I
0.679
VIT_10s0003g00580
Vitis vinifera
VIT_10s0003g00580
I
0.679
Lus10025430.g
Linum usitatissimum
Lus10025430.g
I
0.679
Gorai.001G252900
Gossypium raimondii
Gorai.001G252900
I
0.679
Ca_00359
Cicer arietinum
Ca_00359
I
0.679
Gorai.001G252700
Gossypium raimondii
Gorai.001G252700
I
0.679
PGSC0003DMG400010285
Solanum tuberosum
PGSC0003DMG400010285
I
0.679
ERF3
Arabidopsis thaliana
AT1G50640
D
0.679
Sb03g034780
Sorghum bicolor
Sb03g034780
I
0.679
Pm010368
Prunus mume
Pm010368
I
0.678
PGSC0003DMG400010750
Solanum tuberosum
PGSC0003DMG400010750
I
0.678
29900.m001559
Ricinus communis
29900.m001559
I
0.678
GSMUA_Achr1G15350_001
Musa acuminata
GSMUA_Achr1G15350_001
I
0.678
TCM_005705
Theobroma cacao
TCM_005705
I
0.678
Lus10016210.g
Linum usitatissimum
Lus10016210.g
I
0.678
PRUPE_ppa012014mg
Prunus persica
PRUPE_ppa012014mg
I
0.678
Aquca_005_00143
Aquilegia coerulea
Aquca_005_00143
I
0.678
Solyc03g093610.1
Solanum lycopersicum
Solyc03g093610.1
I
0.678
Solyc09g066360.1
Solanum lycopersicum
Solyc09g066360.1
I
0.678
Eucgr.B01541
Eucalyptus grandis
Eucgr.B01541
I
0.678
Ciclev10024451m.g
Citrus clementina
Ciclev10024451m.g
I
0.677
Bra023748
Brassica rapa
Bra023748
I
0.677
Bo1g102220
Brassica oleracea
Bo1g102220
I
0.677
Eucgr.H03090
Eucalyptus grandis
Eucgr.H03090
I
0.677