CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1375001g001
(
Phoenix dactylifera
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
PDK_20s1375001g001
T024462_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN
NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.771
0.771
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.759
0.759
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1375001g001
B3
76
163
FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYRARGKRLFAGDSVLFIRDEKQQLLLGIRRAN
Links
Other
B3
family TFs
Other
Phoenix dactylifera
TFs
257 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29739.m003713
Ricinus communis
29739.m003713
I
0.928
POPTR_0006s14070
Populus trichocarpa
POPTR_0006s14070
I
0.928
VIT_11s0016g00640
Vitis vinifera
VIT_11s0016g00640
I
0.916
MTR_4g124900
Medicago truncatula
MTR_4g124900
I
0.904
AMTR_s00007p00267580
Amborella trichopoda
AMTR_s00007p00267580
I
0.892
GRMZM2G102845
Zea mays
GRMZM2G102845
I
0.880
MLOC_14584
Hordeum vulgare
MLOC_14584
I
0.880
Traes_7BS_F44A273F8
Triticum aestivum
Traes_7BS_F44A273F8
I
0.880
Traes_7DS_1948388F8
Triticum aestivum
Traes_7DS_1948388F8
I
0.880
Traes_7AS_582E3076D
Triticum aestivum
Traes_7AS_582E3076D
I
0.880
LjSGA_022975.2
Lotus japonicus
LjSGA_022975.2
I
0.865
Solyc04g081240.2
Solanum lycopersicum
Solyc04g081240.2
I
0.855
PGSC0003DMG400003771
Solanum tuberosum
PGSC0003DMG400003771
I
0.855
OB06G15720
Oryza brachyantha
OB06G15720
I
0.855
Cucsa.117420
Cucumis sativus
Cucsa.117420
I
0.846
Pm010467
Prunus mume
Pm010467
I
0.843
ARF6
Vitis vinifera
VIT_10s0003g04100
I
0.843
Lus10024320.g
Linum usitatissimum
Lus10024320.g
I
0.843
gene30394-v1.0-hybrid
Fragaria vesca
gene30394-v1.0-hybrid
I
0.843
TCM_029410
Theobroma cacao
TCM_029410
I
0.843
Gorai.009G152700
Gossypium raimondii
Gorai.009G152700
I
0.843
MDP0000268306
Malus domestica
MDP0000268306
I
0.843
PRUPE_ppa001179mg
Prunus persica
PRUPE_ppa001179mg
I
0.843
MDP0000143749
Malus domestica
MDP0000143749
I
0.843
29599.m000177
Ricinus communis
29599.m000177
I
0.843
PK26077.1
Cannabis sativa
PK26077.1
I
0.843
cassava2408.valid.m1
Manihot esculenta
cassava2408.valid.m1
I
0.843
cassava29103.valid.m1
Manihot esculenta
cassava29103.valid.m1
I
0.831
Cucsa.152170
Cucumis sativus
Cucsa.152170
I
0.831
cassava29104.valid.m1
Manihot esculenta
cassava29104.valid.m1
I
0.831
Cla019844
Citrullus lanatus
Cla019844
I
0.831
cassava32201.m1
Manihot esculenta
cassava32201.m1
I
0.831
BRADI1G46602
Brachypodium distachyon
BRADI1G46602
I
0.831
SapurV1A.0030s0180
Salix purpurea
SapurV1A.0030s0180
I
0.819
SapurV1A.4298s0010
Salix purpurea
SapurV1A.4298s0010
I
0.818
cassava44112.valid.m1
Manihot esculenta
cassava44112.valid.m1
I
0.806
TCM_039715
Theobroma cacao
TCM_039715
I
0.806
SapurV1A.0001s2530
Salix purpurea
SapurV1A.0001s2530
I
0.806
Lus10027600.g
Linum usitatissimum
Lus10027600.g
I
0.796
POPTR_0006s07740
Populus trichocarpa
POPTR_0006s07740
I
0.796
LPERR06G22130
Leersia perrieri
LPERR06G22130
I
0.796
MDP0000185253
Malus domestica
MDP0000185253
I
0.796
OPUNC06G24250
Oryza punctata
OPUNC06G24250
I
0.796
OB06G34290
Oryza brachyantha
OB06G34290
I
0.796
Pm008963
Prunus mume
Pm008963
I
0.796
OGLUM06G27960
Oryza glumaepatula
OGLUM06G27960
I
0.796
Ciclev10007292m.g
Citrus clementina
Ciclev10007292m.g
I
0.796
orange1.1g001969m.g
Citrus sinensis
orange1.1g001969m.g
I
0.796
ORGLA06G0221800
Oryza glaberrima
ORGLA06G0221800
I
0.796
Aquca_018_00174
Aquilegia coerulea
Aquca_018_00174
I
0.796
OMERI06G26660
Oryza meridionalis
OMERI06G26660
I
0.796
ORUFI06G28510
Oryza rufipogon
ORUFI06G28510
I
0.796
Lus10022943.g
Linum usitatissimum
Lus10022943.g
I
0.796
OBART06G26550
Oryza barthii
OBART06G26550
I
0.796
OS06G0702600
Oryza sativa
OS06G0702600
I
0.796
BGIOSGA023559
Oryza indica
BGIOSGA023559
I
0.796
GSMUA_Achr9G14090_001
Musa acuminata
GSMUA_Achr9G14090_001
I
0.796
PK20354.1
Cannabis sativa
PK20354.1
I
0.796
ONIVA06G29090
Oryza nivara
ONIVA06G29090
I
0.796
PRUPE_ppa000479mg
Prunus persica
PRUPE_ppa000479mg
I
0.796
PDK_20s1410001g001
Phoenix dactylifera
PDK_20s1410001g001
I
0.794
ONIVA08G23730
Oryza nivara
ONIVA08G23730
I
0.786
POPTR_0018s14300
Populus trichocarpa
POPTR_0018s14300
I
0.786
30185.m000956
Ricinus communis
30185.m000956
I
0.786
OMERI02G01870
Oryza meridionalis
OMERI02G01870
I
0.786
OBART08G20780
Oryza barthii
OBART08G20780
I
0.786
OGLUM08G22050
Oryza glumaepatula
OGLUM08G22050
I
0.786
VIT_11s0065g00310
Vitis vinifera
VIT_11s0065g00310
I
0.786
OPUNC08G18850
Oryza punctata
OPUNC08G18850
I
0.786
ORGLA08G0183900
Oryza glaberrima
ORGLA08G0183900
I
0.786
GSMUA_Achr5G05010_001
Musa acuminata
GSMUA_Achr5G05010_001
I
0.786
OS08G0520550
Oryza sativa
OS08G0520550
I
0.786
Cucsa.071070
Cucumis sativus
Cucsa.071070
I
0.786
SapurV1A.0521s0030
Salix purpurea
SapurV1A.0521s0030
I
0.786
Cla005884
Citrullus lanatus
Cla005884
I
0.786
ORUFI08G23260
Oryza rufipogon
ORUFI08G23260
I
0.786
BGIOSGA026655
Oryza indica
BGIOSGA026655
I
0.786
Sb08g021460
Sorghum bicolor
Sb08g021460
I
0.783
OMERI04G24630
Oryza meridionalis
OMERI04G24630
I
0.782
ORUFI06G26570
Oryza rufipogon
ORUFI06G26570
I
0.780
LjSGA_026543.1
Lotus japonicus
LjSGA_026543.1
I
0.780
Cucsa.173470
Cucumis sativus
Cucsa.173470
I
0.780
Lus10033635.g
Linum usitatissimum
Lus10033635.g
I
0.776
chr2.CM0373.570.nc
Lotus japonicus
chr2.CM0373.570.nc
I
0.776
Sb10g029130
Sorghum bicolor
Sb10g029130
I
0.776
Traes_7DL_343A252DC
Triticum aestivum
Traes_7DL_343A252DC
I
0.776
GSMUA_Achr8G23850_001
Musa acuminata
GSMUA_Achr8G23850_001
I
0.776
TCM_037484
Theobroma cacao
TCM_037484
I
0.776
TRIUR3_25750
Triticum urartu
TRIUR3_25750
I
0.776
F775_07729
Aegilops tauschii
F775_07729
I
0.776
Traes_7AL_F36D340F4
Triticum aestivum
Traes_7AL_F36D340F4
I
0.776
BRADI1G34340
Brachypodium distachyon
BRADI1G34340
I
0.776
GRMZM2G081158
Zea mays
GRMZM2G081158
I
0.771
Traes_2AL_98457FFEE
Triticum aestivum
Traes_2AL_98457FFEE
I
0.770
Cla009258
Citrullus lanatus
Cla009258
I
0.767
Eucgr.C02178
Eucalyptus grandis
Eucgr.C02178
I
0.765
Gorai.010G091300
Gossypium raimondii
Gorai.010G091300
I
0.765
Eucgr.C03293
Eucalyptus grandis
Eucgr.C03293
I
0.765
Pm027119
Prunus mume
Pm027119
I
0.765
gene12224-v1.0-hybrid
Fragaria vesca
gene12224-v1.0-hybrid
I
0.765
PRUPE_ppa000708mg
Prunus persica
PRUPE_ppa000708mg
I
0.765
Si005741m.g
Setaria italica
Si005741m.g
I
0.765
ORGLA02G0031900
Oryza glaberrima
ORGLA02G0031900
I
0.765
OB02G13010
Oryza brachyantha
OB02G13010
I
0.765
MLOC_63193
Hordeum vulgare
MLOC_63193
I
0.765
MDP0000876321
Malus domestica
MDP0000876321
I
0.765
OBART02G03410
Oryza barthii
OBART02G03410
I
0.765
OGLUM02G03280
Oryza glumaepatula
OGLUM02G03280
I
0.765
LPERR02G03100
Leersia perrieri
LPERR02G03100
I
0.765
OS02G0141100
Oryza sativa
OS02G0141100
I
0.765
GLYMA09G08350
Glycine max
GLYMA09G08350
I
0.765
AMTR_s00025p00198750
Amborella trichopoda
AMTR_s00025p00198750
I
0.765
GLYMA15G19980
Glycine max
GLYMA15G19980
I
0.765
Pavir.J00164
Panicum virgatum
Pavir.J00164
I
0.765
GRMZM2G317900
Zea mays
GRMZM2G317900
I
0.765
OLONG_021742
Oryza longistaminata
OLONG_021742
I
0.765
Pavir.Db00232
Panicum virgatum
Pavir.Db00232
I
0.765
OPUNC02G02660
Oryza punctata
OPUNC02G02660
I
0.765
ORUFI02G03320
Oryza rufipogon
ORUFI02G03320
I
0.765
ONIVA02G03290
Oryza nivara
ONIVA02G03290
I
0.765
OMERI02G04100
Oryza meridionalis
OMERI02G04100
I
0.765
Pavir.Fa00483
Panicum virgatum
Pavir.Fa00483
I
0.755
MLOC_73144
Hordeum vulgare
MLOC_73144
I
0.755
Traes_6BS_444DFA94E
Triticum aestivum
Traes_6BS_444DFA94E
I
0.755
Traes_6AS_967D58FB4
Triticum aestivum
Traes_6AS_967D58FB4
I
0.755
gene12917-v1.0-hybrid
Fragaria vesca
gene12917-v1.0-hybrid
I
0.755
LPERR08G17530
Leersia perrieri
LPERR08G17530
I
0.755
Gorai.009G037100
Gossypium raimondii
Gorai.009G037100
I
0.755
Pavir.Fb01896
Panicum virgatum
Pavir.Fb01896
I
0.755
SapurV1A.2095s0020
Salix purpurea
SapurV1A.2095s0020
I
0.755
cassava25060.valid.m1
Manihot esculenta
cassava25060.valid.m1
I
0.755
Sb04g003240
Sorghum bicolor
Sb04g003240
I
0.755
SapurV1A.0870s0230
Salix purpurea
SapurV1A.0870s0230
I
0.755
Gorai.012G009000
Gossypium raimondii
Gorai.012G009000
I
0.755
Traes_6DS_8BE5BE6AC
Triticum aestivum
Traes_6DS_8BE5BE6AC
I
0.755
Si013155m.g
Setaria italica
Si013155m.g
I
0.755
MDP0000886637
Malus domestica
MDP0000886637
I
0.755
PRUPE_ppa024354mg
Prunus persica
PRUPE_ppa024354mg
I
0.754
VIT_03s0167g00010
Vitis vinifera
VIT_03s0167g00010
I
0.750
evm.TU.supercontig_108.15
Carica papaya
evm.TU.supercontig_108.15
I
0.746
POPTR_0018s07420
Populus trichocarpa
POPTR_0018s07420
I
0.745
BRADI3G40437
Brachypodium distachyon
BRADI3G40437
I
0.745
NPH4
Arabidopsis lyrata
fgenesh2_kg.6__2115__AT5G20730.1
I
0.745
Cagra.1796s0004
Capsella grandiflora
Cagra.1796s0004
I
0.745
Thhalv10012513m.g
Eutrema salsugineum
Thhalv10012513m.g
I
0.745
Bo2g023110
Brassica oleracea
Bo2g023110
I
0.745
Bra020125
Brassica rapa
Bra020125
I
0.745
NPH4
Arabidopsis thaliana
AT5G20730
I
0.745
GSMUA_Achr9G18170_001
Musa acuminata
GSMUA_Achr9G18170_001
I
0.745
mgf012918m
Mimulus guttatus
mgf012918m
I
0.745
Bostr.26527s0132
Boechera stricta
Bostr.26527s0132
I
0.745
MTR_8g101360
Medicago truncatula
MTR_8g101360
I
0.745
ARF19
Arabidopsis thaliana
AT1G19220
I
0.735
Cagra.1961s0078
Capsella grandiflora
Cagra.1961s0078
I
0.735
Carubv10000065m.g
Capsella rubella
Carubv10000065m.g
I
0.735
Thhalv10006635m.g
Eutrema salsugineum
Thhalv10006635m.g
I
0.735
Bostr.7128s0527
Boechera stricta
Bostr.7128s0527
I
0.735
Bo5g027250
Brassica oleracea
Bo5g027250
I
0.735
Bra025720
Brassica rapa
Bra025720
I
0.735
BRADI3G03407
Brachypodium distachyon
BRADI3G03407
I
0.735
Carubv10008159m.g
Capsella rubella
Carubv10008159m.g
I
0.735
Pavir.J32718
Panicum virgatum
Pavir.J32718
I
0.735
MTR_2g043250
Medicago truncatula
MTR_2g043250
I
0.735
Ca_19289
Cicer arietinum
Ca_19289
I
0.735
Si016147m.g
Setaria italica
Si016147m.g
I
0.735
VIT_00s1203g00010
Vitis vinifera
VIT_00s1203g00010
I
0.727
gene08492-v1.0-hybrid
Fragaria vesca
gene08492-v1.0-hybrid
I
0.724
OMERI03G32190
Oryza meridionalis
OMERI03G32190
I
0.724
ARF16
Oryza indica
BGIOSGA022468
I
0.724
PDK_20s1354161g001
Phoenix dactylifera
PDK_20s1354161g001
I
0.724
OGLUM06G06490
Oryza glumaepatula
OGLUM06G06490
I
0.724
OS06G0196700
Oryza sativa
OS06G0196700
I
0.724
LPERR06G05720
Leersia perrieri
LPERR06G05720
I
0.724
ONIVA06G07160
Oryza nivara
ONIVA06G07160
I
0.724
Bra002327
Brassica rapa
Bra002327
I
0.724
OLONG_009780
Oryza longistaminata
OLONG_009780
I
0.724
ORGLA06G0056900
Oryza glaberrima
ORGLA06G0056900
I
0.724
GLYMA08G03141
Glycine max
GLYMA08G03141
I
0.724
OBART06G06150
Oryza barthii
OBART06G06150
I
0.724
Sb10g006440
Sorghum bicolor
Sb10g006440
I
0.724
GRMZM2G160005
Zea mays
GRMZM2G160005
I
0.724
OPUNC06G05940
Oryza punctata
OPUNC06G05940
I
0.724
ORUFI06G06450
Oryza rufipogon
ORUFI06G06450
I
0.724
Ca_05876
Cicer arietinum
Ca_05876
N
0.723
evm.TU.supercontig_115.30
Carica papaya
evm.TU.supercontig_115.30
I
0.722
Solyc07g016180.2
Solanum lycopersicum
Solyc07g016180.2
I
0.722
Cla017138
Citrullus lanatus
Cla017138
I
0.722
PGSC0003DMG400009773
Solanum tuberosum
PGSC0003DMG400009773
I
0.722
chr6.CM0420.10.nd
Lotus japonicus
chr6.CM0420.10.nd
N
0.721
VIT_04s0079g00160
Vitis vinifera
VIT_04s0079g00160
I
0.719
Solyc12g006350.1
Solanum lycopersicum
Solyc12g006350.1
I
0.717
TRIUR3_26420
Triticum urartu
TRIUR3_26420
I
0.716
Gorai.001G017000
Gossypium raimondii
Gorai.001G017000
I
0.714
Traes_7DS_7375BED72
Triticum aestivum
Traes_7DS_7375BED72
I
0.714
Si005753m.g
Setaria italica
Si005753m.g
I
0.714
Gorai.002G124400
Gossypium raimondii
Gorai.002G124400
I
0.714
Lus10012421.g
Linum usitatissimum
Lus10012421.g
I
0.714
MDP0000211459
Malus domestica
MDP0000211459
I
0.714
OB08G27580
Oryza brachyantha
OB08G27580
I
0.714
Pavir.Db01975
Panicum virgatum
Pavir.Db01975
I
0.714
GSMUA_Achr1G20040_001
Musa acuminata
GSMUA_Achr1G20040_001
I
0.714
GSMUA_Achr11G01610_001
Musa acuminata
GSMUA_Achr11G01610_001
I
0.714
TRIUR3_33045
Triticum urartu
TRIUR3_33045
I
0.714
Traes_7BS_3FD792335
Triticum aestivum
Traes_7BS_3FD792335
I
0.714
Bo9g151530
Brassica oleracea
Bo9g151530
I
0.714
Bo8g068380
Brassica oleracea
Bo8g068380
I
0.714
mgf023734m
Mimulus guttatus
mgf023734m
I
0.714
F775_12532
Aegilops tauschii
F775_12532
I
0.714
Bo6g099440
Brassica oleracea
Bo6g099440
I
0.711
cassava7809.valid.m1
Manihot esculenta
cassava7809.valid.m1
I
0.711
Bra004125
Brassica rapa
Bra004125
I
0.711
Ca_03128
Cicer arietinum
Ca_03128
I
0.711
GLYMA01G00510
Glycine max
GLYMA01G00510
I
0.711
PK17611.1
Cannabis sativa
PK17611.1
I
0.711
Traes_2BL_889C1F272
Triticum aestivum
Traes_2BL_889C1F272
I
0.710
GSMUA_Achr3G10240_001
Musa acuminata
GSMUA_Achr3G10240_001
I
0.704
Pavir.Da01885
Panicum virgatum
Pavir.Da01885
I
0.704
orange1.1g002624m.g
Citrus sinensis
orange1.1g002624m.g
I
0.704
Pavir.Ab00366
Panicum virgatum
Pavir.Ab00366
I
0.704
AMTR_s00092p00072950
Amborella trichopoda
AMTR_s00092p00072950
I
0.704
MTR_3g064050
Medicago truncatula
MTR_3g064050
I
0.704
GLYMA11G31940
Glycine max
GLYMA11G31940
I
0.704
GLYMA13G29320
Glycine max
GLYMA13G29320
I
0.704
BRADI5G25157
Brachypodium distachyon
BRADI5G25157
I
0.704
GLYMA14G38940
Glycine max
GLYMA14G38940
I
0.704
GLYMA02G40650
Glycine max
GLYMA02G40650
I
0.704
GLYMA15G09750
Glycine max
GLYMA15G09750
I
0.704
GLYMA18G05330
Glycine max
GLYMA18G05330
I
0.704
OLONG_005008
Oryza longistaminata
OLONG_005008
I
0.704
Cla009963
Citrullus lanatus
Cla009963
I
0.704
Ca_08872
Cicer arietinum
Ca_08872
I
0.704
Ciclev10014198m.g
Citrus clementina
Ciclev10014198m.g
I
0.704
Eucgr.F02090
Eucalyptus grandis
Eucgr.F02090
I
0.704
Cla021128
Citrullus lanatus
Cla021128
I
0.704
Pm006237
Prunus mume
Pm006237
I
0.704
mgf004340m
Mimulus guttatus
mgf004340m
I
0.704
Cucsa.047990
Cucumis sativus
Cucsa.047990
I
0.704
cassava45001.m1
Manihot esculenta
cassava45001.m1
I
0.704
30170.m014161
Ricinus communis
30170.m014161
I
0.704
Sb07g027080
Sorghum bicolor
Sb07g027080
I
0.704
TCM_001906
Theobroma cacao
TCM_001906
I
0.704
Cucsa.342870
Cucumis sativus
Cucsa.342870
I
0.704
ONIVA04G27140
Oryza nivara
ONIVA04G27140
I
0.704
MDP0000232417
Malus domestica
MDP0000232417
I
0.704
OGLUM04G28480
Oryza glumaepatula
OGLUM04G28480
I
0.704
OB04G35570
Oryza brachyantha
OB04G35570
I
0.704
OPUNC04G26100
Oryza punctata
OPUNC04G26100
I
0.704
ORGLA04G0248600
Oryza glaberrima
ORGLA04G0248600
I
0.704
PRUPE_ppa000946mg
Prunus persica
PRUPE_ppa000946mg
I
0.704
OS04G0664400
Oryza sativa
OS04G0664400
I
0.704
GLYMA05G36430
Glycine max
GLYMA05G36430
I
0.701
orange1.1g001728m.g
Citrus sinensis
orange1.1g001728m.g
I
0.701
LjSGA_069146.1
Lotus japonicus
LjSGA_069146.1
I
0.701
Ciclev10007286m.g
Citrus clementina
Ciclev10007286m.g
I
0.701
GLYMA17G05220
Glycine max
GLYMA17G05220
I
0.701
GLYMA13G17270
Glycine max
GLYMA13G17270
I
0.701
chr4.CM0006.290.nc
Lotus japonicus
chr4.CM0006.290.nc
I
0.701