Solyc12g006350.1 (Solanum lycopersicum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Solyc12g006350.1 T021438_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.811 0.811
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.811 0.811
ARF3
M00852_2.00 		Arabidopsis thaliana
NKGTYBNN
NNVRACMN		 PBM
Franco-Zorrilla et al.(2014)
ETTIN 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g006350.1.1 B3 128 186

Links

Other B3 family TFs
Other Solanum lycopersicum TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc12g006340.1 Solanum lycopersicum Solyc12g006340.1 I 0.946
Bra004125 Brassica rapa Bra004125 I 0.925
Bo6g099440 Brassica oleracea Bo6g099440 I 0.925
Ciclev10014200m.g Citrus clementina Ciclev10014200m.g I 0.906
GSMUA_Achr6G19850_001 Musa acuminata GSMUA_Achr6G19850_001 I 0.906
orange1.1g002390m.g Citrus sinensis orange1.1g002390m.g I 0.906
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I 0.887
mgf007038m Mimulus guttatus mgf007038m I 0.887
Solyc02g037530.2 Solanum lycopersicum Solyc02g037530.2 I 0.887
cassava32201.m1 Manihot esculenta cassava32201.m1 I 0.849
SapurV1A.0030s0180 Salix purpurea SapurV1A.0030s0180 I 0.849
GSMUA_Achr1G08230_001 Musa acuminata GSMUA_Achr1G08230_001 I 0.849
gene30394-v1.0-hybrid Fragaria vesca gene30394-v1.0-hybrid I 0.849
29599.m000177 Ricinus communis 29599.m000177 I 0.849
Gorai.009G152700 Gossypium raimondii Gorai.009G152700 I 0.849
MLOC_58330 Hordeum vulgare MLOC_58330 I 0.849
cassava29104.valid.m1 Manihot esculenta cassava29104.valid.m1 I 0.849
MDP0000232417 Malus domestica MDP0000232417 I 0.849
MDP0000268306 Malus domestica MDP0000268306 I 0.849
cassava29103.valid.m1 Manihot esculenta cassava29103.valid.m1 I 0.849
Traes_7BL_66296695F Triticum aestivum Traes_7BL_66296695F I 0.849
SapurV1A.0355s0030 Salix purpurea SapurV1A.0355s0030 I 0.849
cassava2408.valid.m1 Manihot esculenta cassava2408.valid.m1 I 0.849
Traes_7DL_C89614A4D Triticum aestivum Traes_7DL_C89614A4D I 0.849
TCM_029410 Theobroma cacao TCM_029410 I 0.849
Cucsa.047990 Cucumis sativus Cucsa.047990 I 0.849
PRUPE_ppa001179mg Prunus persica PRUPE_ppa001179mg I 0.849
PK26077.1 Cannabis sativa PK26077.1 I 0.849
Pm010467 Prunus mume Pm010467 I 0.849
ARF6 Vitis vinifera VIT_10s0003g04100 I 0.849
POPTR_0011s09450 Populus trichocarpa POPTR_0011s09450 I 0.849
Cla009963 Citrullus lanatus Cla009963 I 0.849
AMTR_s00092p00072950 Amborella trichopoda AMTR_s00092p00072950 I 0.849
POPTR_0017s01870 Populus trichocarpa POPTR_0017s01870 I 0.830
Cucsa.173470 Cucumis sativus Cucsa.173470 I 0.830
Aquca_002_01425 Aquilegia coerulea Aquca_002_01425 I 0.830
OB12G25550 Oryza brachyantha OB12G25550 I 0.830
Sb08g021460 Sorghum bicolor Sb08g021460 I 0.830
mgf005961m Mimulus guttatus mgf005961m I 0.830
Lus10033597.g Linum usitatissimum Lus10033597.g I 0.830
cassava30266.valid.m1 Manihot esculenta cassava30266.valid.m1 I 0.830
Cucsa.152170 Cucumis sativus Cucsa.152170 I 0.830
cassava30265.valid.m1 Manihot esculenta cassava30265.valid.m1 I 0.830
PGSC0003DMG401018664 Solanum tuberosum PGSC0003DMG401018664 I 0.830
TCM_017488 Theobroma cacao TCM_017488 I 0.830
cassava35541.valid.m1 Manihot esculenta cassava35541.valid.m1 I 0.830
Si016562m.g Setaria italica Si016562m.g I 0.830
Lus10017640.g Linum usitatissimum Lus10017640.g I 0.830
Lus10010969.g Linum usitatissimum Lus10010969.g I 0.830
Lus10007386.g Linum usitatissimum Lus10007386.g I 0.830
Lus10031354.g Linum usitatissimum Lus10031354.g I 0.830
MTR_5g076270 Medicago truncatula MTR_5g076270 I 0.830
GRMZM2G081158 Zea mays GRMZM2G081158 I 0.830
SapurV1A.0289s0180 Salix purpurea SapurV1A.0289s0180 I 0.830
Cla019844 Citrullus lanatus Cla019844 I 0.830
SapurV1A.0147s0210 Salix purpurea SapurV1A.0147s0210 I 0.830
OB05G33320 Oryza brachyantha OB05G33320 I 0.830
Ca_15694 Cicer arietinum Ca_15694 I 0.830
VIT_00s1203g00010 Vitis vinifera VIT_00s1203g00010 I 0.830
29769.m000463 Ricinus communis 29769.m000463 I 0.830
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.811
BRADI4G01730 Brachypodium distachyon BRADI4G01730 I 0.811
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.811
Cla009258 Citrullus lanatus Cla009258 I 0.811
LjSGA_022975.2 Lotus japonicus LjSGA_022975.2 I 0.808
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.808
ORUFI06G26570 Oryza rufipogon ORUFI06G26570 I 0.800
SapurV1A.4298s0010 Salix purpurea SapurV1A.4298s0010 I 0.800
F775_00614 Aegilops tauschii F775_00614 I 0.792
SELMODRAFT_430287 Selaginella moellendorffii SELMODRAFT_430287 I 0.792
Traes_2BL_889C1F272 Triticum aestivum Traes_2BL_889C1F272 I 0.792
GRMZM2G441325 Zea mays GRMZM2G441325 I 0.792
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.792
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.792
Bo4g136370 Brassica oleracea Bo4g136370 I 0.792
Sb09g025500 Sorghum bicolor Sb09g025500 I 0.792
Bra028110 Brassica rapa Bra028110 I 0.792
Si000545m.g Setaria italica Si000545m.g I 0.792
GLYMA01G00510 Glycine max GLYMA01G00510 I 0.792
GLYMA05G36430 Glycine max GLYMA05G36430 I 0.792
GSMUA_Achr11G01610_001 Musa acuminata GSMUA_Achr11G01610_001 I 0.792
Gorai.008G097200 Gossypium raimondii Gorai.008G097200 I 0.792
Si021589m.g Setaria italica Si021589m.g I 0.792
Ca_05025 Cicer arietinum Ca_05025 I 0.792
Pavir.J38128 Panicum virgatum Pavir.J38128 I 0.792
GSMUA_Achr10G26140_001 Musa acuminata GSMUA_Achr10G26140_001 I 0.792
ARF4 Arabidopsis thaliana AT5G60450 I 0.774
SELMODRAFT_166729 Selaginella moellendorffii SELMODRAFT_166729 I 0.774
GSMUA_Achr8G13630_001 Musa acuminata GSMUA_Achr8G13630_001 I 0.774
BRADI1G46602 Brachypodium distachyon BRADI1G46602 I 0.774
AMTR_s00007p00267580 Amborella trichopoda AMTR_s00007p00267580 I 0.755
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.755
MLOC_25537 Hordeum vulgare MLOC_25537 I 0.755
MTR_4g088210 Medicago truncatula MTR_4g088210 I 0.755
GLYMA12G07560 Glycine max GLYMA12G07560 I 0.755
MTR_4g124900 Medicago truncatula MTR_4g124900 I 0.755
OB06G15720 Oryza brachyantha OB06G15720 I 0.755
Lus10024320.g Linum usitatissimum Lus10024320.g I 0.755
Gorai.010G091300 Gossypium raimondii Gorai.010G091300 I 0.755
SapurV1A.0012s0780 Salix purpurea SapurV1A.0012s0780 I 0.755
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.755
Aquca_051_00062 Aquilegia coerulea Aquca_051_00062 I 0.755
Aquca_027_00067 Aquilegia coerulea Aquca_027_00067 I 0.755
POPTR_0011s05830 Populus trichocarpa POPTR_0011s05830 I 0.755
Pavir.Eb02716 Panicum virgatum Pavir.Eb02716 I 0.755
POPTR_0004s04970 Populus trichocarpa POPTR_0004s04970 I 0.755
LjSGA_059669.1 Lotus japonicus LjSGA_059669.1 I 0.755
LjSGA_026543.1 Lotus japonicus LjSGA_026543.1 I 0.746
OMERI04G24630 Oryza meridionalis OMERI04G24630 I 0.745
29739.m003713 Ricinus communis 29739.m003713 I 0.736
Pm027119 Prunus mume Pm027119 I 0.736
chr6.CM0420.10.nd Lotus japonicus chr6.CM0420.10.nd N 0.736
PDK_20s1663351g001 Phoenix dactylifera PDK_20s1663351g001 I 0.736
Pm000994 Prunus mume Pm000994 I 0.736
PK18282.1 Cannabis sativa PK18282.1 I 0.736
Thhalv10012074m.g Eutrema salsugineum Thhalv10012074m.g I 0.736
PK07904.1 Cannabis sativa PK07904.1 I 0.736
Pm031349 Prunus mume Pm031349 I 0.736
MDP0000143749 Malus domestica MDP0000143749 I 0.736
evm.TU.supercontig_26.25 Carica papaya evm.TU.supercontig_26.25 I 0.736
evm.TU.supercontig_7.3 Carica papaya evm.TU.supercontig_7.3 I 0.736
evm.TU.supercontig_115.30 Carica papaya evm.TU.supercontig_115.30 I 0.736
Ciclev10027839m.g Citrus clementina Ciclev10027839m.g I 0.736
Carubv10000065m.g Capsella rubella Carubv10000065m.g I 0.736
gene27792-v1.0-hybrid Fragaria vesca gene27792-v1.0-hybrid N 0.736
gene28545-v1.0-hybrid Fragaria vesca gene28545-v1.0-hybrid I 0.736
Lus10033635.g Linum usitatissimum Lus10033635.g I 0.736
e_gw1.64.107.1 Physcomitrella patens e_gw1.64.107.1 I 0.736
cassava45001.m1 Manihot esculenta cassava45001.m1 I 0.736
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.736
Cla021128 Citrullus lanatus Cla021128 I 0.736
orange1.1g003580m.g Citrus sinensis orange1.1g003580m.g I 0.736
Traes_2BL_E322FD546 Triticum aestivum Traes_2BL_E322FD546 I 0.736
OMERI02G35490 Oryza meridionalis OMERI02G35490 I 0.736
LPERR01G26810 Leersia perrieri LPERR01G26810 I 0.736
PRUPE_ppa001557mg Prunus persica PRUPE_ppa001557mg I 0.736
Sb04g003240 Sorghum bicolor Sb04g003240 I 0.736
Sb06g031900 Sorghum bicolor Sb06g031900 I 0.736
SELMODRAFT_451392 Selaginella moellendorffii SELMODRAFT_451392 I 0.736
GRMZM2G102845 Zea mays GRMZM2G102845 I 0.736
SELMODRAFT_179736 Selaginella moellendorffii SELMODRAFT_179736 I 0.736
PRUPE_ppa000708mg Prunus persica PRUPE_ppa000708mg I 0.736
POPTR_0009s01700 Populus trichocarpa POPTR_0009s01700 I 0.736
OB01G35190 Oryza brachyantha OB01G35190 I 0.736
Ca_10748 Cicer arietinum Ca_10748 I 0.736
OPUNC05G20300 Oryza punctata OPUNC05G20300 I 0.736
MTR_1g024025 Medicago truncatula MTR_1g024025 I 0.736
MLOC_55345 Hordeum vulgare MLOC_55345 I 0.736
POPTR_0006s14070 Populus trichocarpa POPTR_0006s14070 I 0.736
PGSC0003DMG400003771 Solanum tuberosum PGSC0003DMG400003771 I 0.736
GRMZM2G086949 Zea mays GRMZM2G086949 I 0.736
PRUPE_ppa002065m1g Prunus persica PRUPE_ppa002065m1g I 0.736
TRAES3BF097400050CFD_g Triticum aestivum TRAES3BF097400050CFD_g I 0.736
TRIUR3_35254 Triticum urartu TRIUR3_35254 I 0.736
GLYMA13G24240 Glycine max GLYMA13G24240 I 0.736
Bra021885 Brassica rapa Bra021885 I 0.736
GLYMA07G32300 Glycine max GLYMA07G32300 I 0.736
Solyc04g081240.2 Solanum lycopersicum Solyc04g081240.2 I 0.736
Traes_3AL_A30A3C355 Triticum aestivum Traes_3AL_A30A3C355 I 0.736
BGIOSGA014158 Oryza indica BGIOSGA014158 I 0.736
GLYMA15G08540 Glycine max GLYMA15G08540 I 0.736
Traes_2AL_05ECC440C Triticum aestivum Traes_2AL_05ECC440C I 0.736
Traes_2DL_FBE64209C Triticum aestivum Traes_2DL_FBE64209C I 0.736
TCM_029792 Theobroma cacao TCM_029792 I 0.736
GRMZM2G034840 Zea mays GRMZM2G034840 I 0.736
MDP0000185253 Malus domestica MDP0000185253 I 0.717
OBART01G31160 Oryza barthii OBART01G31160 I 0.717
OBART08G20780 Oryza barthii OBART08G20780 I 0.717
OLONG_019459 Oryza longistaminata OLONG_019459 I 0.717
OMERI01G28330 Oryza meridionalis OMERI01G28330 I 0.717
OMERI02G01870 Oryza meridionalis OMERI02G01870 I 0.717
BGIOSGA000812 Oryza indica BGIOSGA000812 I 0.717
PDK_20s1375001g001 Phoenix dactylifera PDK_20s1375001g001 I 0.717
OGLUM08G22050 Oryza glumaepatula OGLUM08G22050 I 0.717
OGLUM01G35360 Oryza glumaepatula OGLUM01G35360 I 0.717
ARF19 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001739 N 0.717
PK16974.1 Cannabis sativa PK16974.1 I 0.717
GSMUA_Achr7G11000_001 Musa acuminata GSMUA_Achr7G11000_001 I 0.717
GSMUA_Achr5G05010_001 Musa acuminata GSMUA_Achr5G05010_001 I 0.717
GRMZM2G317900 Zea mays GRMZM2G317900 I 0.717
MLOC_14584 Hordeum vulgare MLOC_14584 I 0.717
MLOC_38232 Hordeum vulgare MLOC_38232 I 0.717
MTR_2g043250 Medicago truncatula MTR_2g043250 I 0.717
orange1.1g012439m.g Citrus sinensis orange1.1g012439m.g I 0.717
BGIOSGA026655 Oryza indica BGIOSGA026655 I 0.717
MDP0000258032 Malus domestica MDP0000258032 I 0.717
ORUFI08G23260 Oryza rufipogon ORUFI08G23260 I 0.717
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.717
Traes_1AL_B14FE48AF Triticum aestivum Traes_1AL_B14FE48AF I 0.717
Traes_1DL_92BCA55C0 Triticum aestivum Traes_1DL_92BCA55C0 I 0.717
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.717
mgf006511m Mimulus guttatus mgf006511m I 0.717
mgf015308m Mimulus guttatus mgf015308m I 0.717
mgf012918m Mimulus guttatus mgf012918m I 0.717
Traes_7AS_582E3076D Triticum aestivum Traes_7AS_582E3076D I 0.717
Traes_7BS_F44A273F8 Triticum aestivum Traes_7BS_F44A273F8 I 0.717
VIT_11s0016g00640 Vitis vinifera VIT_11s0016g00640 I 0.717
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.717
Pm008963 Prunus mume Pm008963 I 0.717
TRIUR3_26420 Triticum urartu TRIUR3_26420 I 0.717
TRIUR3_14814 Triticum urartu TRIUR3_14814 I 0.717
cassava1599.valid.m1 Manihot esculenta cassava1599.valid.m1 I 0.717
Traes_7DS_1948388F8 Triticum aestivum Traes_7DS_1948388F8 I 0.717
mgf020855m Mimulus guttatus mgf020855m I 0.717
PRUPE_ppa000479mg Prunus persica PRUPE_ppa000479mg I 0.717
ORGLA08G0183900 Oryza glaberrima ORGLA08G0183900 I 0.717
ORUFI01G34340 Oryza rufipogon ORUFI01G34340 I 0.717
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.717
OPUNC08G18850 Oryza punctata OPUNC08G18850 I 0.717
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.717
ONIVA08G23730 Oryza nivara ONIVA08G23730 I 0.717
OPUNC01G30260 Oryza punctata OPUNC01G30260 I 0.717
evm.TU.supercontig_9.161 Carica papaya evm.TU.supercontig_9.161 I 0.717
ARF3 Oryza sativa OS01G0753500 I 0.717
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.717
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.717
Eucgr.D00588 Eucalyptus grandis Eucgr.D00588 I 0.717
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.717
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.717
OS08G0520550 Oryza sativa OS08G0520550 I 0.717
ONIVA01G35630 Oryza nivara ONIVA01G35630 I 0.717