CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R002960
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R002960
T135683_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.802
0.944
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.802
0.944
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.802
0.944
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.802
0.944
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.766
0.845
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.766
0.845
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.766
0.845
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.766
0.845
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.766
0.845
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.766
0.845
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.766
0.845
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.766
0.839
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R002960
C2H2 ZF
122
146
FRCGYKGCGRLYTTAHHLKVHERAH
Gfo_R002960
C2H2 ZF
152
176
YTCDFPSCGKAFATGYGLKSHVRTH
Gfo_R002960
C2H2 ZF
182
206
YKCPEDLCSKAFKTSGDLQKHIRTH
Gfo_R002960
C2H2 ZF
212
236
FKCPFVGCGRSFTTSNIRKVHMRTH
Gfo_R002960
C2H2 ZF
242
266
YTCAEPGCGRGFTSATNYKNHMRIH
Gfo_R002960
C2H2 ZF
272
296
YLCTVPGCGKRFTEYSSLYKHHVVH
Gfo_R002960
C2H2 ZF
302
325
YTCSSCGKTYRQTSTLAMHKRSSH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZNF76
Taeniopygia guttata
ENSTGUG00000001745
I
0.819
ENSFALG00000003698
Ficedula albicollis
ENSFALG00000003698
I
0.819
Tal_R002540
Tyto alba
Tal_R002540
I
0.809
Afo_R002092
Aptenodytes forsteri
Afo_R002092
I
0.807
ZNF76
Monodelphis domestica
ENSMODG00000013806
I
0.803
Zfp523
Mus musculus
ENSMUSG00000024220
I
0.803
ENSSHAG00000009934
Sarcophilus harrisii
ENSSHAG00000009934
I
0.803
ZNF76
Cavia porcellus
ENSCPOG00000007381
I
0.803
Zfp523
Rattus norvegicus
ENSRNOG00000000501
I
0.803
ZNF76
Macaca mulatta
ENSMMUG00000023559
I
0.802
ENSBTAP00000008112-D1
Bos grunniens
ENSBTAP00000008112-D1
I
0.802
ZNF76
Homo sapiens
ENSG00000065029
D
0.802
ZNF76
Gorilla gorilla
ENSGGOG00000014188
I
0.802
ENSP00000363064
Macaca fascicularis
ENSP00000363064
I
0.802
ENSMPUG00000003522
Mustela putorius furo
ENSMPUG00000003522
I
0.802
ZNF76
Myotis lucifugus
ENSMLUG00000008610
I
0.802
ZNF76
Tursiops truncatus
ENSTTRG00000009380
I
0.802
ENSPPYG00000016525
Pongo abelii
ENSPPYG00000016525
I
0.802
ZNF76
Pan troglodytes
ENSPTRG00000018080
I
0.802
ZNF76
Pteropus vampyrus
ENSPVAG00000008041
I
0.802
ZNF76
Sus scrofa
ENSSSCG00000001537
I
0.802
ENSSTOG00000000256
Ictidomys tridecemlineatus
ENSSTOG00000000256
I
0.802
ZNF76
Oryctolagus cuniculus
ENSOCUG00000015630
I
0.802
ENSOPRG00000009136
Ochotona princeps
ENSOPRG00000009136
I
0.802
ENSPANG00000021154
Papio anubis
ENSPANG00000021154
I
0.802
ZNF76
Felis catus
ENSFCAG00000005893
I
0.802
ZNF76
Loxodonta africana
ENSLAFG00000026071
I
0.802
ZNF76
Callithrix jacchus
ENSCJAG00000015519
I
0.802
ZNF76
Equus caballus
ENSECAG00000014843
I
0.802
ENSCSAG00000009955
Chlorocebus sabaeus
ENSCSAG00000009955
I
0.802
ZNF76
Dasypus novemcinctus
ENSDNOG00000015856
I
0.802
ZNF76
Canis familiaris
ENSCAFG00000001304
I
0.802
ZNF76
Choloepus hoffmanni
ENSCHOG00000003197
I
0.802
ZNF76
Bos taurus
ENSBTAG00000006170
I
0.802
ENSAMEG00000000752
Ailuropoda melanoleuca
ENSAMEG00000000752
I
0.802
Myotis_brandtii_ZNF76_10017771
Myotis brandtii
Myotis_brandtii_ZNF76_10017771
I
0.802
ZNF76
Otolemur garnettii
ENSOGAG00000002935
I
0.800
ENSPSIG00000005652
Pelodiscus sinensis
ENSPSIG00000005652
I
0.799
Cmyd_10011173
Chelonia mydas
Cmyd_10011173
I
0.799
Alligator_sinensis_CCG020455.1
Alligator sinensis
Alligator_sinensis_CCG020455.1
I
0.798
znf76
Danio rerio
ENSDARG00000013279
I
0.798
ENSLOCG00000011655
Lepisosteus oculatus
ENSLOCG00000011655
I
0.789
Sakowv30036637m.g
Saccoglossus kowalevskii
Sakowv30036637m.g
I
0.785
Sakowv30044960m.g
Saccoglossus kowalevskii
Sakowv30044960m.g
I
0.785
ENSAMXG00000008869
Astyanax mexicanus
ENSAMXG00000008869
I
0.782
Ocbimv22038914m.g
Octopus bimaculoides
Ocbimv22038914m.g
I
0.777
SMAR015659
Strigamia maritima
SMAR015659
I
0.772
ENSAPLG00000005226
Anas platyrhynchos
ENSAPLG00000005226
I
0.772
LotgiG222832
Lottia gigantea
LotgiG222832
I
0.770
znf143.S
Xenopus laevis
XB-GENE-1012509
I
0.769
ENSLACG00000017669
Latimeria chalumnae
ENSLACG00000017669
I
0.769
AAH73068
Xenopus laevis
AAH73068
I
0.768
ENSLOCG00000003619
Lepisosteus oculatus
ENSLOCG00000003619
I
0.768
znf143b
Gasterosteus aculeatus
ENSGACG00000009776
I
0.768
znf143
Xenopus tropicalis
XB-GENE-1012504
I
0.768
znf143b
Danio rerio
ENSDARG00000041581
I
0.767
Pvit_03784
Pogona vitticeps
Pvit_03784
I
0.766
ENSP00000379847
Macaca fascicularis
ENSP00000379847
I
0.766
ENSP00000379847-D1
Bos grunniens
ENSP00000379847-D1
I
0.766
ZNF143
Sorex araneus
ENSSARG00000007780
I
0.766
Tal_R001092
Tyto alba
Tal_R001092
I
0.766
znf143b
Tetraodon nigroviridis
ENSTNIG00000013739
I
0.766
ZNF143
Tursiops truncatus
ENSTTRG00000015353
I
0.766
Gfo_R011843
Geospiza fortis
Gfo_R011843
I
0.766
Aan_R006576
Calypte anna
Aan_R006576
I
0.766
Afo_R014591
Aptenodytes forsteri
Afo_R014591
I
0.766
Alligator_sinensis_CCG018668.1
Alligator sinensis
Alligator_sinensis_CCG018668.1
I
0.766
Brh_R005520
Buceros rhinoceros
Brh_R005520
I
0.766
Zfp143
Rattus norvegicus
ENSRNOG00000010087
I
0.766
znf143
Takifugu rubripes
ENSTRUG00000009324
I
0.766
ENSTSYG00000004324
Tarsius syrichta
ENSTSYG00000004324
I
0.766
ENSTGUG00000008153
Taeniopygia guttata
ENSTGUG00000008153
I
0.766
ZNF143
Otolemur garnettii
ENSOGAG00000011518
I
0.766
ZNF143
Gallus gallus
ENSGALG00000005787
I
0.766
ZNF143
Homo sapiens
ENSG00000166478
D
0.766
ZNF143
Felis catus
ENSFCAG00000002342
I
0.766
ZNF143
Loxodonta africana
ENSLAFG00000004487
I
0.766
ENSMEUG00000003014
Macropus eugenii
ENSMEUG00000003014
I
0.766
ZNF143
Pan troglodytes
ENSPTRG00000003349
I
0.766
ZNF143
Meleagris gallopavo
ENSMGAG00000006206
I
0.766
ENSFALG00000000985
Ficedula albicollis
ENSFALG00000000985
I
0.766
ZNF143
Erinaceus europaeus
ENSEEUG00000000955
I
0.766
ENSAPLG00000002385
Anas platyrhynchos
ENSAPLG00000002385
I
0.766
ENSAMEG00000003872
Ailuropoda melanoleuca
ENSAMEG00000003872
I
0.766
ZNF143
Canis familiaris
ENSCAFG00000007373
I
0.766
ZNF143
Callithrix jacchus
ENSCJAG00000011327
I
0.766
ZNF143
Equus caballus
ENSECAG00000018889
I
0.766
ZNF143
Cavia porcellus
ENSCPOG00000003109
I
0.766
ZNF143
Macaca mulatta
ENSMMUG00000008758
I
0.766
ZNF143
Microcebus murinus
ENSMICG00000004353
I
0.766
ZNF143
Monodelphis domestica
ENSMODG00000007909
I
0.766
ZNF143
Anolis carolinensis
ENSACAG00000009338
I
0.766
ZNF143
Ochotona princeps
ENSOPRG00000005466
I
0.766
ENSPANG00000002501
Papio anubis
ENSPANG00000002501
I
0.766
ENSPSIG00000009683
Pelodiscus sinensis
ENSPSIG00000009683
I
0.766
ENSPPYG00000003495
Pongo abelii
ENSPPYG00000003495
I
0.766
ZNF143
Oryctolagus cuniculus
ENSOCUG00000005226
I
0.766
ENSONIG00000015524
Oreochromis niloticus
ENSONIG00000015524
I
0.766
ENSOARG00000012477
Ovis aries
ENSOARG00000012477
I
0.766
Zfp143
Mus musculus
ENSMUSG00000061079
D
0.766
ENSMPUG00000012796
Mustela putorius furo
ENSMPUG00000012796
I
0.766
ENSPFOG00000008911
Poecilia formosa
ENSPFOG00000008911
I
0.765
Ogr18895
Ophisaurus gracilis
Ogr18895
I
0.765
ENSGMOG00000001888
Gadus morhua
ENSGMOG00000001888
I
0.765
ZNF143
Myotis lucifugus
ENSMLUG00000000213
I
0.765
ENSXMAG00000005152
Xiphophorus maculatus
ENSXMAG00000005152
I
0.765
ENSAMXG00000003833
Astyanax mexicanus
ENSAMXG00000003833
I
0.764
ENSCSAG00000004520
Chlorocebus sabaeus
ENSCSAG00000004520
I
0.763
ZNF143
Ornithorhynchus anatinus
ENSOANG00000005853
I
0.763
Myotis_brandtii_ZNF143_10021171
Myotis brandtii
Myotis_brandtii_ZNF143_10021171
I
0.763
estExt_fgenesh2_pg.C_1970081
Branchiostoma floridae
estExt_fgenesh2_pg.C_1970081
I
0.761
znf143b
Oryzias latipes
ENSORLG00000001130
I
0.759
ENSSTOG00000009647
Ictidomys tridecemlineatus
ENSSTOG00000009647
I
0.759