gene05169-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene05169-v1.0-hybrid T142947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.767 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05169.1-v1.0-hybrid C2H2 ZF 42 64

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK10012.1 Cannabis sativa PK10012.1 I 0.817
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.814
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.814
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.814
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.814
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.814
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.814
Si037914m.g Setaria italica Si037914m.g I 0.814
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.812
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.779
Pm008291 Prunus mume Pm008291 I 0.779
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.779
GIS2 Arabidopsis thaliana AT5G06650 I 0.776
MDP0000165710 Malus domestica MDP0000165710 I 0.776
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.776
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.776
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.776
MDP0000121370 Malus domestica MDP0000121370 I 0.776
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.776
Bra028724 Brassica rapa Bra028724 I 0.776
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.776
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.776
Bo2g007320 Brassica oleracea Bo2g007320 I 0.776
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.776
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.776
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.776
Ca_08116 Cicer arietinum Ca_08116 I 0.774
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.769
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.769
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.769
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.767
30045.m000471 Ricinus communis 30045.m000471 I 0.767
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.767
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.767
ZFP5 Arabidopsis thaliana AT1G10480 D 0.767
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.767
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.767
30076.m004693 Ricinus communis 30076.m004693 I 0.767
Bo8g109510 Brassica oleracea Bo8g109510 I 0.767
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.766
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.766
TCM_044725 Theobroma cacao TCM_044725 I 0.766
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.766
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.766
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.766
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.766
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.766
Bo9g166240 Brassica oleracea Bo9g166240 I 0.766
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.766
Bo9g011450 Brassica oleracea Bo9g011450 I 0.766
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.766
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.766
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.766
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.766
F775_42450 Aegilops tauschii F775_42450 I 0.766
Bra008787 Brassica rapa Bra008787 I 0.766
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.766
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.766
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.766
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.766
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.766
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.766
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.766
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.766
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.766
Carubv10003685m.g Capsella rubella Carubv10003685m.g I 0.764
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.764
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.764
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.764
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.764
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.764
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.764
OBART09G11250 Oryza barthii OBART09G11250 I 0.764
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.764
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.764
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.764
OB09G17800 Oryza brachyantha OB09G17800 I 0.764
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.764
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.764
F775_01070 Aegilops tauschii F775_01070 I 0.764
GRMZM2G108818 Zea mays GRMZM2G108818 I 0.764
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.764
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.764
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.764
Si028367m.g Setaria italica Si028367m.g I 0.764
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.764
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.764
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.764
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.764
Si031489m.g Setaria italica Si031489m.g I 0.764
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.764
OS09G0431900 Oryza sativa OS09G0431900 I 0.764
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.764
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.764
Bra020571 Brassica rapa Bra020571 N 0.762
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.762
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N 0.762
Bo2g155500 Brassica oleracea Bo2g155500 N 0.762
MDP0000166683 Malus domestica MDP0000166683 I 0.757