POPTR_0010s16290 (Populus trichocarpa)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03859 (CG-1) IPR005559 POPTR_0010s16290 T163341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMTA2
M01901_2.00 		Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN		 PBM
Weirauch et al.(2014)
pTH7506 		0.859 0.859
EICBP.B
M06828_2.00 		Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH		 Dap-seq
OMalley et al.(2016)
CAMTA1_col_a 		0.846 0.846
CMTA3
M01900_2.00 		Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB		 PBM
Weirauch et al.(2014)
pTH8209 		0.821 0.821
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s16290.1 CG-1 1 79

Links

Other CG-1 family TFs
Other Populus trichocarpa TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003372 Ricinus communis 29889.m003372 I 0.936
SELMODRAFT_441667 Selaginella moellendorffii SELMODRAFT_441667 I 0.872
SELMODRAFT_413101 Selaginella moellendorffii SELMODRAFT_413101 I 0.872
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I 0.859
Carubv10025787m.g Capsella rubella Carubv10025787m.g I 0.859
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I 0.859
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I 0.859
CMTA2 Arabidopsis thaliana AT5G64220 D 0.859
Cla013051 Citrullus lanatus Cla013051 I 0.846
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I 0.846
Ca_05255 Cicer arietinum Ca_05255 I 0.846
PRUPE_ppa000612mg Prunus persica PRUPE_ppa000612mg I 0.846
Ca_09562 Cicer arietinum Ca_09562 I 0.843
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I 0.833
chr4.LjT13D08.100.nd Lotus japonicus chr4.LjT13D08.100.nd I 0.833
Bra038534 Brassica rapa Bra038534 I 0.833
PRUPE_ppa000912mg Prunus persica PRUPE_ppa000912mg I 0.831
OMERI03G17850 Oryza meridionalis OMERI03G17850 I 0.821
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I 0.821
BGIOSGA012779 Oryza indica BGIOSGA012779 I 0.821
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.821
ONIVA03G21570 Oryza nivara ONIVA03G21570 I 0.821
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I 0.821
GSMUA_AchrUn_randomG02100_001 Musa acuminata GSMUA_AchrUn_randomG02100_001 I 0.821
GLYMA05G31190 Glycine max GLYMA05G31190 I 0.821
GSMUA_AchrUn_randomG08930_001 Musa acuminata GSMUA_AchrUn_randomG08930_001 I 0.821
OBART03G19880 Oryza barthii OBART03G19880 I 0.821
PK00072.1 Cannabis sativa PK00072.1 N 0.812
CMTA3 Arabidopsis thaliana AT2G22300 D 0.808
Sb01g044480 Sorghum bicolor Sb01g044480 I 0.808
Pavir.Ib00572 Panicum virgatum Pavir.Ib00572 I 0.808
mgf010601m Mimulus guttatus mgf010601m I 0.808
mgf015897m Mimulus guttatus mgf015897m I 0.808
Si028797m.g Setaria italica Si028797m.g I 0.808
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.795
OBART10G08060 Oryza barthii OBART10G08060 I 0.795
OB10G16130 Oryza brachyantha OB10G16130 I 0.795
MLOC_63299 Hordeum vulgare MLOC_63299 I 0.795
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.795
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.795
OS10G0375600 Oryza sativa OS10G0375600 I 0.795
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.795
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.795
SELMODRAFT_18382 Selaginella moellendorffii SELMODRAFT_18382 I 0.789
SELMODRAFT_28388 Selaginella moellendorffii SELMODRAFT_28388 I 0.789
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.782
OB03G16740 Oryza brachyantha OB03G16740 I 0.769
GRMZM2G431243 Zea mays GRMZM2G431243 I 0.762
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I 0.756
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I 0.756
mgf024932m Mimulus guttatus mgf024932m I 0.756
Sb0012s010230 Sorghum bicolor Sb0012s010230 I 0.756
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.756
Cla004910 Citrullus lanatus Cla004910 N 0.756
CAMTA3 Vitis vinifera VIT_07s0141g00250 I 0.733
Lus10003405.g Linum usitatissimum Lus10003405.g I 0.731
Bra016887 Brassica rapa Bra016887 I 0.727
Traes_4BL_A37F6FD08 Triticum aestivum Traes_4BL_A37F6FD08 I 0.726
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N 0.718
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.705
GSMUA_Achr9G01330_001 Musa acuminata GSMUA_Achr9G01330_001 N 0.705
SapurV1A.0050s0650 Salix purpurea SapurV1A.0050s0650 I 0.705
GLYMA17G03510 Glycine max GLYMA17G03510 I 0.705
GSMUA_Achr3G21310_001 Musa acuminata GSMUA_Achr3G21310_001 I 0.705
Solyc12g035520.1 Solanum lycopersicum Solyc12g035520.1 N 0.705