Pavir.Ib00572 (Panicum virgatum)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Pavir.Ib00572 T163581_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMTA2
M01901_2.00 		Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN		 PBM
Weirauch et al.(2014)
pTH7506 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib00572.1.p CG-1 30 142

Links

Other CG-1 family TFs
Other Panicum virgatum TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_4BL_A37F6FD08 Triticum aestivum Traes_4BL_A37F6FD08 I 0.893
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.878
GRMZM2G431243 Zea mays GRMZM2G431243 I 0.857
CMTA3 Arabidopsis thaliana AT2G22300 D 0.855
Pavir.Ib01843 Panicum virgatum Pavir.Ib01843 I 0.844
Ca_09562 Cicer arietinum Ca_09562 I 0.843
SELMODRAFT_18382 Selaginella moellendorffii SELMODRAFT_18382 I 0.817
SELMODRAFT_28388 Selaginella moellendorffii SELMODRAFT_28388 I 0.817
CAMTA3 Vitis vinifera VIT_07s0141g00250 I 0.811
POPTR_0010s16290 Populus trichocarpa POPTR_0010s16290 I 0.808
PRUPE_ppa000612mg Prunus persica PRUPE_ppa000612mg I 0.793
OB03G16740 Oryza brachyantha OB03G16740 I 0.762
PRUPE_ppa000912mg Prunus persica PRUPE_ppa000912mg I 0.759
ONIVA10G07200 Oryza nivara ONIVA10G07200 I 0.753
MTR_2g008840 Medicago truncatula MTR_2g008840 I 0.745
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.743
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I 0.733
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I 0.733
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.733
Sb0012s010230 Sorghum bicolor Sb0012s010230 I 0.733
Si034076m.g Setaria italica Si034076m.g I 0.719
Pavir.J38535 Panicum virgatum Pavir.J38535 I 0.719
BGIOSGA011302 Oryza indica BGIOSGA011302 I 0.711
OS03G0191000 Oryza sativa OS03G0191000 I 0.711
OMERI03G06500 Oryza meridionalis OMERI03G06500 I 0.711
OGLUM03G06680 Oryza glumaepatula OGLUM03G06680 I 0.711
OBART03G06570 Oryza barthii OBART03G06570 I 0.711
OLONG_001033 Oryza longistaminata OLONG_001033 I 0.711
ORUFI03G06510 Oryza rufipogon ORUFI03G06510 I 0.711
ORGLA03G0064000 Oryza glaberrima ORGLA03G0064000 I 0.711
ONIVA02G06230 Oryza nivara ONIVA02G06230 I 0.711
LPERR03G05920 Leersia perrieri LPERR03G05920 I 0.711
Bra016887 Brassica rapa Bra016887 I 0.705
OPUNC10G06950 Oryza punctata OPUNC10G06950 I 0.702
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.702
OBART10G08060 Oryza barthii OBART10G08060 I 0.702
GSMUA_Achr6G10390_001 Musa acuminata GSMUA_Achr6G10390_001 I 0.702
BRADI1G71810 Brachypodium distachyon BRADI1G71810 I 0.702
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.702
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.702
OS10G0375600 Oryza sativa OS10G0375600 I 0.702
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.702
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.702
Sb01g044480 Sorghum bicolor Sb01g044480 I 0.702