CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.008G089900
(
Gossypium raimondii
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03859 (CG-1)
IPR005559
Gorai.008G089900
T163537_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CMTA2
M01901_2.00
Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN
PBM
Weirauch et al.(2014)
pTH7506
0.881
0.881
EICBP.B
M06828_2.00
Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH
Dap-seq
OMalley et al.(2016)
CAMTA1_col_a
0.816
0.816
CMTA3
M01900_2.00
Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB
PBM
Weirauch et al.(2014)
pTH8209
0.845
0.845
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G089900.1
CG-1
21
135
EAQHRWLRPAEICEILRNYKKFHISSEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDV
Gorai.008G089900.2
CG-1
1
85
MPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDV
Gorai.008G089900.3
CG-1
1
85
MPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDV
Gorai.008G089900.4
CG-1
12
94
LGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEDLSHIVLVHYRDV
Links
Other
CG-1
family TFs
Other
Gossypium raimondii
TFs
206 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa000612mg
Prunus persica
PRUPE_ppa000612mg
I
0.951
TCM_001108
Theobroma cacao
TCM_001108
I
0.951
PK28233.1
Cannabis sativa
PK28233.1
I
0.947
Pm002007
Prunus mume
Pm002007
I
0.939
Aquca_008_00132
Aquilegia coerulea
Aquca_008_00132
I
0.927
Solyc04g056270.2
Solanum lycopersicum
Solyc04g056270.2
I
0.927
GRMZM2G431243
Zea mays
GRMZM2G431243
I
0.917
Traes_4BL_A37F6FD08
Triticum aestivum
Traes_4BL_A37F6FD08
I
0.917
evm.TU.supercontig_213.9
Carica papaya
evm.TU.supercontig_213.9
I
0.915
GSMUA_Achr6G10390_001
Musa acuminata
GSMUA_Achr6G10390_001
I
0.912
Ciclev10024764m.g
Citrus clementina
Ciclev10024764m.g
I
0.912
orange1.1g001365m.g
Citrus sinensis
orange1.1g001365m.g
I
0.912
SapurV1A.0039s0030
Salix purpurea
SapurV1A.0039s0030
I
0.912
OB03G16740
Oryza brachyantha
OB03G16740
I
0.905
LPERR10G05550
Leersia perrieri
LPERR10G05550
I
0.905
chr4.LjT13D08.100.nd
Lotus japonicus
chr4.LjT13D08.100.nd
I
0.905
Gorai.005G220600
Gossypium raimondii
Gorai.005G220600
I
0.904
ORUFI03G06510
Oryza rufipogon
ORUFI03G06510
I
0.902
OBART03G06570
Oryza barthii
OBART03G06570
I
0.902
OBART10G08060
Oryza barthii
OBART10G08060
I
0.902
ORUFI10G08490
Oryza rufipogon
ORUFI10G08490
I
0.902
OS10G0375600
Oryza sativa
OS10G0375600
I
0.902
ORGLA10G0066800
Oryza glaberrima
ORGLA10G0066800
I
0.902
OS03G0191000
Oryza sativa
OS03G0191000
I
0.902
OGLUM10G07770
Oryza glumaepatula
OGLUM10G07770
I
0.902
ONIVA10G07730
Oryza nivara
ONIVA10G07730
I
0.902
ONIVA02G06230
Oryza nivara
ONIVA02G06230
I
0.902
OMERI03G06500
Oryza meridionalis
OMERI03G06500
I
0.902
ORGLA03G0064000
Oryza glaberrima
ORGLA03G0064000
I
0.902
OLONG_001033
Oryza longistaminata
OLONG_001033
I
0.902
LPERR03G05920
Leersia perrieri
LPERR03G05920
I
0.902
OLONG_003971
Oryza longistaminata
OLONG_003971
I
0.902
OB10G16130
Oryza brachyantha
OB10G16130
I
0.902
Si034054m.g
Setaria italica
Si034054m.g
I
0.902
OGLUM03G06680
Oryza glumaepatula
OGLUM03G06680
I
0.902
Eucgr.H04783
Eucalyptus grandis
Eucgr.H04783
I
0.902
BGIOSGA011302
Oryza indica
BGIOSGA011302
I
0.902
AMTR_s00038p00173360
Amborella trichopoda
AMTR_s00038p00173360
I
0.902
Ca_09562
Cicer arietinum
Ca_09562
I
0.900
SapurV1A.0403s0170
Salix purpurea
SapurV1A.0403s0170
I
0.895
POPTR_0007s05410
Populus trichocarpa
POPTR_0007s05410
I
0.895
GLYMA05G31190
Glycine max
GLYMA05G31190
I
0.895
TCM_007482
Theobroma cacao
TCM_007482
I
0.895
GLYMA08G14370
Glycine max
GLYMA08G14370
I
0.895
OBART03G19880
Oryza barthii
OBART03G19880
I
0.890
OMERI03G17850
Oryza meridionalis
OMERI03G17850
I
0.890
BGIOSGA012779
Oryza indica
BGIOSGA012779
I
0.890
ONIVA03G21570
Oryza nivara
ONIVA03G21570
I
0.890
OGLUM03G20490
Oryza glumaepatula
OGLUM03G20490
I
0.890
ORUFI03G20520
Oryza rufipogon
ORUFI03G20520
I
0.890
Sb01g044480
Sorghum bicolor
Sb01g044480
I
0.890
Aquca_010_00201
Aquilegia coerulea
Aquca_010_00201
I
0.890
Pavir.J38535
Panicum virgatum
Pavir.J38535
I
0.886
POPTR_0005s07660
Populus trichocarpa
POPTR_0005s07660
I
0.886
MDP0000290409
Malus domestica
MDP0000290409
I
0.886
Cagra.0248s0103
Capsella grandiflora
Cagra.0248s0103
I
0.881
Sb0012s010230
Sorghum bicolor
Sb0012s010230
I
0.881
Bostr.0568s0382
Boechera stricta
Bostr.0568s0382
I
0.881
Carubv10025787m.g
Capsella rubella
Carubv10025787m.g
I
0.881
Pavir.Ia02749
Panicum virgatum
Pavir.Ia02749
I
0.881
Pavir.Ib02991
Panicum virgatum
Pavir.Ib02991
I
0.881
scaffold_803130.1
Arabidopsis lyrata
scaffold_803130.1
I
0.881
CMTA2
Arabidopsis thaliana
AT5G64220
D
0.881
GRMZM2G341747
Zea mays
GRMZM2G341747
I
0.881
GSMUA_AchrUn_randomG02100_001
Musa acuminata
GSMUA_AchrUn_randomG02100_001
I
0.878
GLYMA08G19101
Glycine max
GLYMA08G19101
I
0.878
Ca_05255
Cicer arietinum
Ca_05255
I
0.878
GSMUA_Achr1G21540_001
Musa acuminata
GSMUA_Achr1G21540_001
I
0.878
Pavir.Ib00572
Panicum virgatum
Pavir.Ib00572
I
0.878
GLYMA05G24430
Glycine max
GLYMA05G24430
I
0.877
GLYMA08G07680
Glycine max
GLYMA08G07680
I
0.877
GLYMA15G05900
Glycine max
GLYMA15G05900
I
0.877
GRMZM2G447551
Zea mays
GRMZM2G447551
I
0.868
Si034076m.g
Setaria italica
Si034076m.g
I
0.868
BRADI1G71810
Brachypodium distachyon
BRADI1G71810
I
0.868
Gorai.013G061100
Gossypium raimondii
Gorai.013G061100
I
0.868
Bra037769
Brassica rapa
Bra037769
I
0.868
Thhalv10003564m.g
Eutrema salsugineum
Thhalv10003564m.g
I
0.868
CMTA3
Arabidopsis thaliana
AT2G22300
D
0.868
CAMTA3
Vitis vinifera
VIT_07s0141g00250
I
0.867
orange1.1g001759m.g
Citrus sinensis
orange1.1g001759m.g
I
0.866
Eucgr.I02662
Eucalyptus grandis
Eucgr.I02662
I
0.866
Cla004910
Citrullus lanatus
Cla004910
N
0.866
Ciclev10004234m.g
Citrus clementina
Ciclev10004234m.g
I
0.866
Cla013051
Citrullus lanatus
Cla013051
I
0.866
GSMUA_AchrUn_randomG08930_001
Musa acuminata
GSMUA_AchrUn_randomG08930_001
I
0.866
Bo4g136970
Brassica oleracea
Bo4g136970
I
0.863
OPUNC10G06950
Oryza punctata
OPUNC10G06950
I
0.860
Sb01g033650
Sorghum bicolor
Sb01g033650
I
0.860
chr6.CM0314.100.nd
Lotus japonicus
chr6.CM0314.100.nd
I
0.860
cassava1518.valid.m1
Manihot esculenta
cassava1518.valid.m1
I
0.860
Bo9g018010
Brassica oleracea
Bo9g018010
I
0.860
Bra038534
Brassica rapa
Bra038534
I
0.857
SELMODRAFT_441667
Selaginella moellendorffii
SELMODRAFT_441667
I
0.854
MTR_2g008840
Medicago truncatula
MTR_2g008840
I
0.854
Traes_5BL_92902F993
Triticum aestivum
Traes_5BL_92902F993
I
0.854
mgf024932m
Mimulus guttatus
mgf024932m
I
0.854
Aquca_003_00380
Aquilegia coerulea
Aquca_003_00380
I
0.854
TRIUR3_23040
Triticum urartu
TRIUR3_23040
I
0.854
SELMODRAFT_413101
Selaginella moellendorffii
SELMODRAFT_413101
I
0.854
Eucgr.I02632
Eucalyptus grandis
Eucgr.I02632
I
0.854
chr4.CM0182.510.nc
Lotus japonicus
chr4.CM0182.510.nc
I
0.854
BGIOSGA032809
Oryza indica
BGIOSGA032809
I
0.851
Pavir.Ia03131
Panicum virgatum
Pavir.Ia03131
I
0.851
Traes_4DL_C2F35966E
Triticum aestivum
Traes_4DL_C2F35966E
I
0.851
Traes_4AL_2F7E6536A
Triticum aestivum
Traes_4AL_2F7E6536A
I
0.851
orange1.1g001406m.g
Citrus sinensis
orange1.1g001406m.g
I
0.851
Cucsa.217940
Cucumis sativus
Cucsa.217940
I
0.851
Lus10041704.g
Linum usitatissimum
Lus10041704.g
I
0.851
F775_29292
Aegilops tauschii
F775_29292
I
0.851
MLOC_38704
Hordeum vulgare
MLOC_38704
I
0.851
SELMODRAFT_18382
Selaginella moellendorffii
SELMODRAFT_18382
I
0.845
SELMODRAFT_28388
Selaginella moellendorffii
SELMODRAFT_28388
I
0.845
PRUPE_ppa000912mg
Prunus persica
PRUPE_ppa000912mg
I
0.843
EICBP.B
Arabidopsis lyrata
fgenesh2_kg.6__888__AT5G09410.2
I
0.842
28281.m000379
Ricinus communis
28281.m000379
I
0.842
CAMTA3
Arabidopsis lyrata
fgenesh2_kg.4__153__AT2G22300.2
I
0.841
Bo4g149510
Brassica oleracea
Bo4g149510
I
0.841
Cagra.2300s0004
Capsella grandiflora
Cagra.2300s0004
I
0.841
Carubv10024738m.g
Capsella rubella
Carubv10024738m.g
I
0.841
Bostr.5022s0003
Boechera stricta
Bostr.5022s0003
I
0.841
mgf010601m
Mimulus guttatus
mgf010601m
I
0.833
Bra009382
Brassica rapa
Bra009382
I
0.833
Cagra.1365s0113
Capsella grandiflora
Cagra.1365s0113
I
0.833
PK04004.1
Cannabis sativa
PK04004.1
I
0.833
Thhalv10012552m.g
Eutrema salsugineum
Thhalv10012552m.g
I
0.833
Bostr.13129s0055
Boechera stricta
Bostr.13129s0055
I
0.833
Bo9g174050
Brassica oleracea
Bo9g174050
I
0.833
MLOC_63299
Hordeum vulgare
MLOC_63299
I
0.833
OB03G29080
Oryza brachyantha
OB03G29080
I
0.833
Carubv10000120m.g
Capsella rubella
Carubv10000120m.g
I
0.833
mgf015897m
Mimulus guttatus
mgf015897m
I
0.833
Si034046m.g
Setaria italica
Si034046m.g
I
0.833
EICBP.B
Arabidopsis thaliana
AT5G09410
D
0.829
29889.m003372
Ricinus communis
29889.m003372
I
0.829
Sb02g039710
Sorghum bicolor
Sb02g039710
I
0.829
Pavir.J35200
Panicum virgatum
Pavir.J35200
I
0.829
VIT_05s0020g00630
Vitis vinifera
VIT_05s0020g00630
I
0.825
MTR_8g090205
Medicago truncatula
MTR_8g090205
I
0.825
OPUNC03G18730
Oryza punctata
OPUNC03G18730
I
0.825
BRADI3G23800
Brachypodium distachyon
BRADI3G23800
I
0.825
POPTR_0010s16290
Populus trichocarpa
POPTR_0010s16290
I
0.821
Si028797m.g
Setaria italica
Si028797m.g
I
0.817
MDP0000139862
Malus domestica
MDP0000139862
I
0.816
Thhalv10000026m.g
Eutrema salsugineum
Thhalv10000026m.g
I
0.816
Bra030248
Brassica rapa
Bra030248
I
0.816
Lus10003405.g
Linum usitatissimum
Lus10003405.g
I
0.816
LPERR03G17060
Leersia perrieri
LPERR03G17060
I
0.816
Solyc01g105230.2
Solanum lycopersicum
Solyc01g105230.2
I
0.816
GSMUA_Achr3G21310_001
Musa acuminata
GSMUA_Achr3G21310_001
I
0.816
Cla018421
Citrullus lanatus
Cla018421
I
0.816
LPERR07G19680
Leersia perrieri
LPERR07G19680
I
0.807
OGLUM07G22660
Oryza glumaepatula
OGLUM07G22660
I
0.807
OLONG_018130
Oryza longistaminata
OLONG_018130
I
0.807
GLYMA17G04310
Glycine max
GLYMA17G04310
I
0.807
OBART07G22710
Oryza barthii
OBART07G22710
I
0.807
Pavir.Ba00386
Panicum virgatum
Pavir.Ba00386
I
0.807
OPUNC07G21310
Oryza punctata
OPUNC07G21310
I
0.807
ORUFI07G23760
Oryza rufipogon
ORUFI07G23760
I
0.807
ONIVA07G22160
Oryza nivara
ONIVA07G22160
I
0.807
ORGLA10G0167300
Oryza glaberrima
ORGLA10G0167300
I
0.807
BRADI1G60817
Brachypodium distachyon
BRADI1G60817
I
0.807
ORGLA07G0175700
Oryza glaberrima
ORGLA07G0175700
I
0.807
BRADI1G21372
Brachypodium distachyon
BRADI1G21372
I
0.807
BGIOSGA023886
Oryza indica
BGIOSGA023886
I
0.798
F775_11311
Aegilops tauschii
F775_11311
I
0.798
Traes_2AS_506D953C1
Triticum aestivum
Traes_2AS_506D953C1
I
0.798
OB07G28190
Oryza brachyantha
OB07G28190
I
0.798
TRIUR3_23792
Triticum urartu
TRIUR3_23792
I
0.798
Traes_2DS_D05DC56BD
Triticum aestivum
Traes_2DS_D05DC56BD
I
0.798
Pm008450
Prunus mume
Pm008450
I
0.781
GSMUA_Achr3G08460_001
Musa acuminata
GSMUA_Achr3G08460_001
I
0.781
TCM_021468
Theobroma cacao
TCM_021468
I
0.780
Pavir.Ib01843
Panicum virgatum
Pavir.Ib01843
I
0.778
gene16294-v1.0-hybrid
Fragaria vesca
gene16294-v1.0-hybrid
N
0.768
AMTR_s00045p00052450
Amborella trichopoda
AMTR_s00045p00052450
I
0.763
MDP0000245567
Malus domestica
MDP0000245567
N
0.759
GLYMA11G36930
Glycine max
GLYMA11G36930
N
0.756
SapurV1A.0072s0470
Salix purpurea
SapurV1A.0072s0470
I
0.754
OLONG_004418
Oryza longistaminata
OLONG_004418
I
0.750
OPUNC03G06340
Oryza punctata
OPUNC03G06340
I
0.750
MTR_4g094215
Medicago truncatula
MTR_4g094215
I
0.750
GLYMA18G00840
Glycine max
GLYMA18G00840
N
0.744
gw1.188.72.1
Physcomitrella patens
gw1.188.72.1
I
0.737
Gorai.011G204700
Gossypium raimondii
Gorai.011G204700
I
0.737
ONIVA10G07200
Oryza nivara
ONIVA10G07200
I
0.737
cassava42936.valid.m1
Manihot esculenta
cassava42936.valid.m1
N
0.732
TCM_008731
Theobroma cacao
TCM_008731
N
0.732
gene29100-v1.0-hybrid
Fragaria vesca
gene29100-v1.0-hybrid
I
0.728
MDP0000293674
Malus domestica
MDP0000293674
I
0.725
Eucgr.H04623
Eucalyptus grandis
Eucgr.H04623
N
0.720
Solyc05g015650.2
Solanum lycopersicum
Solyc05g015650.2
N
0.720
Solyc12g035520.1
Solanum lycopersicum
Solyc12g035520.1
N
0.720
SapurV1A.1172s0010
Salix purpurea
SapurV1A.1172s0010
N
0.720
Ciclev10030636m.g
Citrus clementina
Ciclev10030636m.g
N
0.720
orange1.1g044976m.g
Citrus sinensis
orange1.1g044976m.g
N
0.720
VIT_00s0805g00010
Vitis vinifera
VIT_00s0805g00010
N
0.718
PK00072.1
Cannabis sativa
PK00072.1
N
0.708
Ca_11361
Cicer arietinum
Ca_11361
N
0.707
PRUPE_ppa000516mg
Prunus persica
PRUPE_ppa000516mg
N
0.707
GSMUA_Achr9G01330_001
Musa acuminata
GSMUA_Achr9G01330_001
N
0.707
POPTR_0001s13700
Populus trichocarpa
POPTR_0001s13700
N
0.707
Bra016887
Brassica rapa
Bra016887
I
0.705
PK06349.1
Cannabis sativa
PK06349.1
N
0.702
Aquca_040_00102
Aquilegia coerulea
Aquca_040_00102
N
0.702