GCM2 (Felis catus)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSFCAG00000001608 T197994_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.957 0.957
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.957 0.957
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.957 0.957
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.957 0.957
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.884 0.884
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.833 0.833
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.826 0.826
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.710 0.710
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.710 0.710
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.703 0.703
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.696 0.696
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.696 0.696
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.696 0.696
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.696 0.696
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.696 0.696
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.696 0.696
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.696 0.696
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.696 0.696
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.696 0.696
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.688 0.688
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.667 0.667
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.667 0.667
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.667 0.667
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.652 0.652
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.652 0.652
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.652 0.652
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000001492 GCM 38 175

Links

Other GCM family TFs
Other Felis catus TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0004_1965 Arabidopsis lyrata Al_scaffold_0004_1965 N 0.000
BHLH52 Arabidopsis thaliana AT1G30670 N 0.000
BHLH53 Arabidopsis thaliana AT2G34820 N 0.000
BGIOSGA037431 Oryza indica BGIOSGA037431 N 0.000
Bo3g028090 Brassica oleracea Bo3g028090 N 0.000
Bo4g039270 Brassica oleracea Bo4g039270 N 0.000
Bo4g182930 Brassica oleracea Bo4g182930 N 0.000
Bostr.15697s0367 Boechera stricta Bostr.15697s0367 N 0.000
Bostr.23794s0621 Boechera stricta Bostr.23794s0621 N 0.000
Bra005389 Brassica rapa Bra005389 N 0.000
Bra021933 Brassica rapa Bra021933 N 0.000
Bra022993 Brassica rapa Bra022993 N 0.000
BRADI4G29370 Brachypodium distachyon BRADI4G29370 N 0.000
Cagra.1508s0136 Capsella grandiflora Cagra.1508s0136 N 0.000
cassava27522.m1 Manihot esculenta cassava27522.m1 N 0.000
Ca_13608 Cicer arietinum Ca_13608 N 0.000
Ca_13610 Cicer arietinum Ca_13610 N 0.000
Ciclev10017579m.g Citrus clementina Ciclev10017579m.g N 0.000
Eucgr.D01630 Eucalyptus grandis Eucgr.D01630 N 0.000
evm.TU.supercontig_489.5 Carica papaya evm.TU.supercontig_489.5 N 0.000
evm.TU.supercontig_489.6 Carica papaya evm.TU.supercontig_489.6 N 0.000
F775_52642 Aegilops tauschii F775_52642 N 0.000
fgenesh1_pm.C_scaffold_1002485 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002485 N 0.000
gene18542-v1.0-hybrid Fragaria vesca gene18542-v1.0-hybrid N 0.000
gene20146-v1.0-hybrid Fragaria vesca gene20146-v1.0-hybrid N 0.000
GLYMA15G41400 Glycine max GLYMA15G41400 N 0.000
GRMZM2G137374 Zea mays GRMZM2G137374 N 0.000
GSMUA_Achr11G16900_001 Musa acuminata GSMUA_Achr11G16900_001 N 0.000
GSMUA_AchrUn_randomG20690_001 Musa acuminata GSMUA_AchrUn_randomG20690_001 N 0.000
Lus10005451.g Linum usitatissimum Lus10005451.g N 0.000
Lus10038432.g Linum usitatissimum Lus10038432.g N 0.000
MDP0000209483 Malus domestica MDP0000209483 N 0.000
MDP0000280921 Malus domestica MDP0000280921 N 0.000
MDP0000791364 Malus domestica MDP0000791364 N 0.000
MTR_1g060700 Medicago truncatula MTR_1g060700 N 0.000
MTR_2g067000 Medicago truncatula MTR_2g067000 N 0.000
OB07G14260 Oryza brachyantha OB07G14260 N 0.000
OB12G20560 Oryza brachyantha OB12G20560 N 0.000
OGLUM12G14400 Oryza glumaepatula OGLUM12G14400 N 0.000
ONIVA12G13030 Oryza nivara ONIVA12G13030 N 0.000
OPUNC12G11490 Oryza punctata OPUNC12G11490 N 0.000
orange1.1g041370m.g Citrus sinensis orange1.1g041370m.g N 0.000
ORGLA12G0114800 Oryza glaberrima ORGLA12G0114800 N 0.000
ORUFI12G13970 Oryza rufipogon ORUFI12G13970 N 0.000
Pavir.Ca01783 Panicum virgatum Pavir.Ca01783 N 0.000
Pavir.Ca01784 Panicum virgatum Pavir.Ca01784 N 0.000
Pavir.Ia04589 Panicum virgatum Pavir.Ia04589 N 0.000
Pm010610 Prunus mume Pm010610 N 0.000
POPTR_0001s46530 Populus trichocarpa POPTR_0001s46530 N 0.000
POPTR_0011s16100 Populus trichocarpa POPTR_0011s16100 N 0.000
PRUPE_ppa017597mg Prunus persica PRUPE_ppa017597mg N 0.000
SapurV1A.0527s0040 Salix purpurea SapurV1A.0527s0040 N 0.000
SapurV1A.0602s0120 Salix purpurea SapurV1A.0602s0120 N 0.000
Sb01g048400 Sorghum bicolor Sb01g048400 N 0.000
Si038598m.g Setaria italica Si038598m.g N 0.000
TCM_033386 Theobroma cacao TCM_033386 N 0.000
Thhalv10009765m.g Eutrema salsugineum Thhalv10009765m.g N 0.000
Thhalv10017751m.g Eutrema salsugineum Thhalv10017751m.g N 0.000
Traes_5BL_B55F708EC Triticum aestivum Traes_5BL_B55F708EC N 0.000
Traes_5DL_84C86F76D Triticum aestivum Traes_5DL_84C86F76D N 0.000
VIT_10s0092g00030 Vitis vinifera VIT_10s0092g00030 N 0.000