POPTR_0001s23560 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s23560 T278193_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s23560.1 Myb 227 278

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.826
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.826
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.781
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.781
mgf015795m Mimulus guttatus mgf015795m N 0.770
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N 0.750
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.747
VIT_13s0156g00390 Vitis vinifera VIT_13s0156g00390 I 0.743
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I 0.742
GLYMA09G17404 Glycine max GLYMA09G17404 N 0.741
MTR_1g053835 Medicago truncatula MTR_1g053835 N 0.741
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I 0.736
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N 0.732
Cla011853 Citrullus lanatus Cla011853 N 0.732
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N 0.732
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N 0.732
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N 0.732
28582.m000316 Ricinus communis 28582.m000316 N 0.732
Cucsa.353890 Cucumis sativus Cucsa.353890 N 0.732
cassava39743.m1 Manihot esculenta cassava39743.m1 N 0.732
AT5G06800 Arabidopsis thaliana AT5G06800 N 0.732
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N 0.732
Bo2g007410 Brassica oleracea Bo2g007410 N 0.732
Lus10021035.g Linum usitatissimum Lus10021035.g N 0.732
TCM_024886 Theobroma cacao TCM_024886 N 0.732
Bra028717 Brassica rapa Bra028717 N 0.732
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N 0.732
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N 0.732
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N 0.732
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N 0.732
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N 0.732
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N 0.732
Lus10023816.g Linum usitatissimum Lus10023816.g N 0.731
GLYMA18G43130 Glycine max GLYMA18G43130 I 0.731
30226.m001993 Ricinus communis 30226.m001993 N 0.729
mgf007532m Mimulus guttatus mgf007532m N 0.727
mgf007985m Mimulus guttatus mgf007985m N 0.727
Bo3g004040 Brassica oleracea Bo3g004040 N 0.726
Bra005912 Brassica rapa Bra005912 N 0.726
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N 0.721
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N 0.721
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N 0.721
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N 0.721
MTR_7g068600 Medicago truncatula MTR_7g068600 N 0.720
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I 0.720
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N 0.717
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N 0.717
VIT_13s0156g00370 Vitis vinifera VIT_13s0156g00370 N 0.716
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I 0.713
chr1.LjB18K24.110.nd Lotus japonicus chr1.LjB18K24.110.nd I 0.713
GRMZM2G035370 Zea mays GRMZM2G035370 I 0.704
MDP0000182154 Malus domestica MDP0000182154 I 0.702
MDP0000142146 Malus domestica MDP0000142146 I 0.702
Ca_14198 Cicer arietinum Ca_14198 N 0.701
GLYMA02G30800 Glycine max GLYMA02G30800 N 0.701
MTR_7g093030 Medicago truncatula MTR_7g093030 N 0.698
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N 0.693
Pm025973 Prunus mume Pm025973 N 0.693
MDP0000184307 Malus domestica MDP0000184307 N 0.693
MDP0000253656 Malus domestica MDP0000253656 N 0.693
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N 0.693
Eucgr.A00517 Eucalyptus grandis Eucgr.A00517 I 0.690
MDP0000280005 Malus domestica MDP0000280005 N 0.687
PGSC0003DMG400023674 Solanum tuberosum PGSC0003DMG400023674 N 0.683
Lus10038734.g Linum usitatissimum Lus10038734.g I 0.683
Lus10039124.g Linum usitatissimum Lus10039124.g I 0.683
Bra014348 Brassica rapa Bra014348 I 0.683
Solyc10g080460.1 Solanum lycopersicum Solyc10g080460.1 N 0.683
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N 0.678
EuGene.0700010469 Micromonas sp RCC299 EuGene.0700010469 I 0.676
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I 0.676
VIT_08s0105g00370 Vitis vinifera VIT_08s0105g00370 I 0.676
Bo9g175820 Brassica oleracea Bo9g175820 I 0.672
Carubv10003217m.g Capsella rubella Carubv10003217m.g N 0.672
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N 0.672
PRUPE_ppa021540mg Prunus persica PRUPE_ppa021540mg I 0.672
Bra009228 Brassica rapa Bra009228 I 0.672
PK00827.1 Cannabis sativa PK00827.1 N 0.671
SELMODRAFT_270428 Selaginella moellendorffii SELMODRAFT_270428 I 0.670
SELMODRAFT_228335 Selaginella moellendorffii SELMODRAFT_228335 I 0.670
POPTR_0016s12430 Populus trichocarpa POPTR_0016s12430 I 0.669
POPTR_0006s10190 Populus trichocarpa POPTR_0006s10190 I 0.669
PDK_20s1349221g001 Phoenix dactylifera PDK_20s1349221g001 N 0.668
gene13487-v1.0-hybrid Fragaria vesca gene13487-v1.0-hybrid I 0.665
PK15677.1 Cannabis sativa PK15677.1 I 0.665
Gorai.002G265400 Gossypium raimondii Gorai.002G265400 I 0.665
GLYMA18G43550 Glycine max GLYMA18G43550 I 0.665
Gorai.012G117800 Gossypium raimondii Gorai.012G117800 I 0.665
evm.TU.supercontig_120.33 Carica papaya evm.TU.supercontig_120.33 I 0.665
Cucsa.130050 Cucumis sativus Cucsa.130050 I 0.665
Cla018361 Citrullus lanatus Cla018361 I 0.665
PGSC0003DMG400015893 Solanum tuberosum PGSC0003DMG400015893 I 0.665
Solyc02g080740.1 Solanum lycopersicum Solyc02g080740.1 N 0.665
PGSC0003DMG400030032 Solanum tuberosum PGSC0003DMG400030032 I 0.665
Solyc10g076460.1 Solanum lycopersicum Solyc10g076460.1 I 0.665
Solyc06g051060.2 Solanum lycopersicum Solyc06g051060.2 I 0.665
est_orfs.1_306_4269596:1 Micromonas pusilla est_orfs.1_306_4269596:1 I 0.664
GRMZM2G124495 Zea mays GRMZM2G124495 I 0.661
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I 0.661
orange1.1g025728m.g Citrus sinensis orange1.1g025728m.g I 0.661
29701.m000580 Ricinus communis 29701.m000580 I 0.661
BGIOSGA014151 Oryza indica BGIOSGA014151 I 0.661
Si022099m.g Setaria italica Si022099m.g I 0.661
Sb06g031970 Sorghum bicolor Sb06g031970 I 0.661
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I 0.661
OS04G0665600 Oryza sativa OS04G0665600 I 0.661
Ciclev10013453m.g Citrus clementina Ciclev10013453m.g I 0.661
Lus10004809.g Linum usitatissimum Lus10004809.g I 0.661
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I 0.661
ONIVA04G27220 Oryza nivara ONIVA04G27220 I 0.661
TCM_021688 Theobroma cacao TCM_021688 I 0.661
OLONG_005000 Oryza longistaminata OLONG_005000 I 0.661
Lus10005036.g Linum usitatissimum Lus10005036.g I 0.661
OBART04G28680 Oryza barthii OBART04G28680 I 0.661
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I 0.661
LPERR04G24240 Leersia perrieri LPERR04G24240 I 0.661
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I 0.661
OPUNC04G26200 Oryza punctata OPUNC04G26200 I 0.661
OB04G35670 Oryza brachyantha OB04G35670 I 0.661
Lus10027806.g Linum usitatissimum Lus10027806.g I 0.661
OMERI04G24260 Oryza meridionalis OMERI04G24260 I 0.661