Carubv10018233m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10018233m.g T286373_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018233m Myb 80 124
Carubv10018236m Myb 78 122

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N 0.888
Bostr.13158s0169 Boechera stricta Bostr.13158s0169 N 0.868
CPC Arabidopsis lyrata Al_scaffold_0005_3105 N 0.868
Bra004539 Brassica rapa Bra004539 N 0.819
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.819
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.819
Bo4g197120 Brassica oleracea Bo4g197120 N 0.819
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.819
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.819
Bo3g039260 Brassica oleracea Bo3g039260 N 0.819
Bo4g009260 Brassica oleracea Bo4g009260 N 0.819
CPC Arabidopsis thaliana AT2G46410 N 0.819
Bra039283 Brassica rapa Bra039283 N 0.797
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N 0.763
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.762
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.762
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.756
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.756
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.756
Bo3g022870 Brassica oleracea Bo3g022870 N 0.756
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.756
TRY Arabidopsis thaliana AT5G53200 N 0.756
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.756
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.741
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.741
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.741
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.740
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.740
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.740
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.738
MDP0000141474 Malus domestica MDP0000141474 N 0.738
Pm018400 Prunus mume Pm018400 N 0.738
Bo9g110930 Brassica oleracea Bo9g110930 N 0.734
MDP0000583070 Malus domestica MDP0000583070 N 0.728
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.728
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.719
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.716
Ca_15029 Cicer arietinum Ca_15029 N 0.715
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.715
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.715
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.715
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.715
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.715
TCM_005177 Theobroma cacao TCM_005177 N 0.715
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.715
Bra022637 Brassica rapa Bra022637 N 0.713
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.713
Bo2g046050 Brassica oleracea Bo2g046050 N 0.709
GSMUA_Achr1G05080_001 Musa acuminata GSMUA_Achr1G05080_001 N 0.707
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.700
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.700
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.696
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.695
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.693
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.688
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.682
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.681
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.679
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.675
GSMUA_Achr3G25090_001 Musa acuminata GSMUA_Achr3G25090_001 N 0.674
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.668
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.668
TCM_016428 Theobroma cacao TCM_016428 N 0.667
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.666
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.663
29742.m001447 Ricinus communis 29742.m001447 N 0.663
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.661
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.661