Carubv10027412m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10027412m.g T286461_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027412m Myb 33 75

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.909
TRY Arabidopsis thaliana AT5G53200 N 0.909
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.909
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.909
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.909
Bo3g022870 Brassica oleracea Bo3g022870 N 0.903
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.887
Bo9g110930 Brassica oleracea Bo9g110930 N 0.887
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.867
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.851
Bo2g046050 Brassica oleracea Bo2g046050 N 0.850
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.836
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.831
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.827
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.827
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.827
TCM_005177 Theobroma cacao TCM_005177 N 0.827
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.827
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.827
Bra022637 Brassica rapa Bra022637 N 0.823
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.810
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.810
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.810
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.807
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.804
Pm018400 Prunus mume Pm018400 N 0.804
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.804
MDP0000583070 Malus domestica MDP0000583070 N 0.804
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.798
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.798
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.797
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.796
Ca_15029 Cicer arietinum Ca_15029 N 0.796
Bra004539 Brassica rapa Bra004539 N 0.795
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.795
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.795
Bra039283 Brassica rapa Bra039283 N 0.795
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.795
Bo4g197120 Brassica oleracea Bo4g197120 N 0.795
Bo3g039260 Brassica oleracea Bo3g039260 N 0.795
CPC Arabidopsis thaliana AT2G46410 N 0.795
Bo4g009260 Brassica oleracea Bo4g009260 N 0.795
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.795
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.793
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.793
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.792
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.788
CPC Arabidopsis lyrata Al_scaffold_0005_3105 N 0.783
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.783
29742.m001447 Ricinus communis 29742.m001447 N 0.781
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.781
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.781
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N 0.777
Pm019781 Prunus mume Pm019781 N 0.774
PRUPE_ppa024794mg Prunus persica PRUPE_ppa024794mg N 0.774
MDP0000141474 Malus domestica MDP0000141474 N 0.773
TCL1 Arabidopsis thaliana AT2G30432 N 0.772
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.772
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N 0.770
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.770
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.767
GSMUA_Achr3G25090_001 Musa acuminata GSMUA_Achr3G25090_001 N 0.765
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.763
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.762
TCM_016428 Theobroma cacao TCM_016428 N 0.759
Carubv10018233m.g Capsella rubella Carubv10018233m.g N 0.756
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.754
GSMUA_Achr1G05080_001 Musa acuminata GSMUA_Achr1G05080_001 N 0.749
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.744
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.744
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.744
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.740
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.740
Bostr.13158s0169 Boechera stricta Bostr.13158s0169 N 0.740
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.739
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.739
Bra026297 Brassica rapa Bra026297 N 0.735
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.734
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.734
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.734
Aquca_028_00182 Aquilegia coerulea Aquca_028_00182 N 0.732
Carubv10025583m.g Capsella rubella Carubv10025583m.g N 0.731
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.723
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.719
TCL2 Arabidopsis thaliana AT2G30424 N 0.718
TCL2 Arabidopsis lyrata scaffold_401531.1 N 0.718
scaffold_401530.1 Arabidopsis lyrata scaffold_401530.1 N 0.717
30169.m006531 Ricinus communis 30169.m006531 N 0.717
Cla011563 Citrullus lanatus Cla011563 N 0.714
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.713
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.712
Bostr.24513s0195 Boechera stricta Bostr.24513s0195 N 0.711
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N 0.710
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.707
ETC3 Arabidopsis thaliana AT4G01060 N 0.693
Bra008539 Brassica rapa Bra008539 N 0.693
MDP0000547418 Malus domestica MDP0000547418 N 0.693
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.693
MDP0000718806 Malus domestica MDP0000718806 N 0.693
Bo2g098940 Brassica oleracea Bo2g098940 N 0.693
TCM_015351 Theobroma cacao TCM_015351 N 0.692
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.690
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.683
Bo3g024610 Brassica oleracea Bo3g024610 N 0.677
Bra000941 Brassica rapa Bra000941 N 0.671
Bo3g054440 Brassica oleracea Bo3g054440 N 0.671
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.670