CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra000941
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra000941
T267690_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra000941.1-P
Myb
30
74
AVNMNQEEEDLVRRMHKLVGDRWELIAGRIPGRTAAEIERFWVMK
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g054440
Brassica oleracea
Bo3g054440
N
0.909
Thhalv10029104m.g
Eutrema salsugineum
Thhalv10029104m.g
N
0.862
ETC3
Arabidopsis thaliana
AT4G01060
N
0.841
Bra008539
Brassica rapa
Bra008539
N
0.841
Bo2g098940
Brassica oleracea
Bo2g098940
N
0.841
Bostr.7365s0058
Boechera stricta
Bostr.7365s0058
N
0.841
Carubv10003403m.g
Capsella rubella
Carubv10003403m.g
N
0.827
Cagra.1372s0017
Capsella grandiflora
Cagra.1372s0017
N
0.827
ETC3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002892
N
0.818
SapurV1A.0013s0580
Salix purpurea
SapurV1A.0013s0580
N
0.753
Bra026297
Brassica rapa
Bra026297
N
0.735
POPTR_0014s09200
Populus trichocarpa
POPTR_0014s09200
N
0.733
Gorai.007G107400
Gossypium raimondii
Gorai.007G107400
N
0.732
orange1.1g034546m.g
Citrus sinensis
orange1.1g034546m.g
N
0.732
PRUPE_ppa023853mg
Prunus persica
PRUPE_ppa023853mg
N
0.732
Eucgr.E00069
Eucalyptus grandis
Eucgr.E00069
N
0.732
Ciclev10024111m.g
Citrus clementina
Ciclev10024111m.g
N
0.732
cassava46504.m1
Manihot esculenta
cassava46504.m1
N
0.732
cassava32987.m1
Manihot esculenta
cassava32987.m1
N
0.732
Pm018400
Prunus mume
Pm018400
N
0.732
TCM_005177
Theobroma cacao
TCM_005177
N
0.732
Ciclev10006315m.g
Citrus clementina
Ciclev10006315m.g
N
0.729
POPTR_0002s17030
Populus trichocarpa
POPTR_0002s17030
N
0.728
Solyc01g095640.1
Solanum lycopersicum
Solyc01g095640.1
N
0.724
PGSC0003DMG400000212
Solanum tuberosum
PGSC0003DMG400000212
N
0.724
Bra037388
Brassica rapa
Bra037388
N
0.724
Bo9g003750
Brassica oleracea
Bo9g003750
N
0.724
MDP0000583070
Malus domestica
MDP0000583070
N
0.722
gene19217-v1.0-hybrid
Fragaria vesca
gene19217-v1.0-hybrid
N
0.722
Lus10005949.g
Linum usitatissimum
Lus10005949.g
N
0.722
VIT_15s0046g01130
Vitis vinifera
VIT_15s0046g01130
N
0.711
Ca_15029
Cicer arietinum
Ca_15029
N
0.707
MTR_5g009460
Medicago truncatula
MTR_5g009460
N
0.707
Carubv10024393m.g
Capsella rubella
Carubv10024393m.g
N
0.704
MDP0000141474
Malus domestica
MDP0000141474
N
0.701
Cla011563
Citrullus lanatus
Cla011563
N
0.699
Gorai.001G155700
Gossypium raimondii
Gorai.001G155700
N
0.696
Bo4g009260
Brassica oleracea
Bo4g009260
N
0.694
Bo3g039260
Brassica oleracea
Bo3g039260
N
0.694
Thhalv10001695m.g
Eutrema salsugineum
Thhalv10001695m.g
N
0.694
Carubv10024406m.g
Capsella rubella
Carubv10024406m.g
N
0.694
Bo4g197120
Brassica oleracea
Bo4g197120
N
0.694
Cagra.0050s0058
Capsella grandiflora
Cagra.0050s0058
N
0.694
Bostr.25993s0128
Boechera stricta
Bostr.25993s0128
N
0.694
Bra004539
Brassica rapa
Bra004539
N
0.694
CPC
Arabidopsis thaliana
AT2G46410
N
0.694
Bo9g110930
Brassica oleracea
Bo9g110930
N
0.693
evm.TU.supercontig_3.55
Carica papaya
evm.TU.supercontig_3.55
N
0.691
Thhalv10009233m.g
Eutrema salsugineum
Thhalv10009233m.g
N
0.691
GLYMA01G43435
Glycine max
GLYMA01G43435
N
0.691
SapurV1A.2295s0020
Salix purpurea
SapurV1A.2295s0020
N
0.687
SapurV1A.0190s0070
Salix purpurea
SapurV1A.0190s0070
N
0.687
SapurV1A.2893s0010
Salix purpurea
SapurV1A.2893s0010
N
0.687
VIT_16s0050g02530
Vitis vinifera
VIT_16s0050g02530
N
0.685
Eucgr.D02360
Eucalyptus grandis
Eucgr.D02360
N
0.685
Aquca_037_00095
Aquilegia coerulea
Aquca_037_00095
N
0.682
29742.m001447
Ricinus communis
29742.m001447
N
0.680
GLYMA11G02061
Glycine max
GLYMA11G02061
N
0.680
ETC1
Arabidopsis lyrata
Al_scaffold_0001_92
N
0.678
Carubv10011382m.g
Capsella rubella
Carubv10011382m.g
N
0.678
ETC1
Arabidopsis thaliana
AT1G01380
N
0.678
Cagra.1968s0081
Capsella grandiflora
Cagra.1968s0081
N
0.678
Bostr.5325s0057
Boechera stricta
Bostr.5325s0057
N
0.678
30169.m006531
Ricinus communis
30169.m006531
N
0.677
Aquca_013_00134
Aquilegia coerulea
Aquca_013_00134
N
0.675
Carubv10024964m.g
Capsella rubella
Carubv10024964m.g
N
0.674
Bra039283
Brassica rapa
Bra039283
N
0.673
scaffold_401530.1
Arabidopsis lyrata
scaffold_401530.1
N
0.673
Cucsa.201970
Cucumis sativus
Cucsa.201970
N
0.672
Bo3g022870
Brassica oleracea
Bo3g022870
N
0.671
Bostr.26833s0960
Boechera stricta
Bostr.26833s0960
N
0.671
TCL1
Arabidopsis lyrata
fgenesh2_kg.4__1015__AT2G30432.1
N
0.671
TRY
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8001350
N
0.671
POPTR_0015s02310
Populus trichocarpa
POPTR_0015s02310
N
0.671
Carubv10027412m.g
Capsella rubella
Carubv10027412m.g
N
0.671
Thhalv10015741m.g
Eutrema salsugineum
Thhalv10015741m.g
N
0.671
Cagra.0084s0067
Capsella grandiflora
Cagra.0084s0067
N
0.671
TRY
Arabidopsis thaliana
AT5G53200
N
0.671
TCL1
Arabidopsis thaliana
AT2G30432
N
0.671
TCM_016428
Theobroma cacao
TCM_016428
N
0.668
Eucgr.K00332
Eucalyptus grandis
Eucgr.K00332
N
0.666
GSMUA_Achr8G19880_001
Musa acuminata
GSMUA_Achr8G19880_001
N
0.664
Bostr.13158s0169
Boechera stricta
Bostr.13158s0169
N
0.663
Bostr.24513s0195
Boechera stricta
Bostr.24513s0195
N
0.661
TCL2
Arabidopsis thaliana
AT2G30424
N
0.661
TCL2
Arabidopsis lyrata
scaffold_401531.1
N
0.661