POPTR_0012s01420 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0012s01420 T278415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s01420.1 Myb 34 76

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.878
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.878
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.878
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.857
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.856
TCM_015351 Theobroma cacao TCM_015351 N 0.849
30169.m006531 Ricinus communis 30169.m006531 N 0.837
Eucgr.K00332 Eucalyptus grandis Eucgr.K00332 N 0.823
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.814
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.813
Carubv10011382m.g Capsella rubella Carubv10011382m.g N 0.813
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.813
ETC1 Arabidopsis thaliana AT1G01380 N 0.813
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.813
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.807
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.798
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.789
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.781
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.768
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.768
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.768
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.768
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.768
TCM_005177 Theobroma cacao TCM_005177 N 0.768
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N 0.767
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.765
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.762
Ca_15029 Cicer arietinum Ca_15029 N 0.762
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.755
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.755
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.755
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.754
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.748
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.747
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.746
MDP0000387366 Malus domestica MDP0000387366 N 0.745
29842.m003592 Ricinus communis 29842.m003592 N 0.745
30086.m000210 Ricinus communis 30086.m000210 N 0.745
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N 0.745
MDP0000141474 Malus domestica MDP0000141474 N 0.739
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.739
Pm018400 Prunus mume Pm018400 N 0.739
Thhalv10009233m.g Eutrema salsugineum Thhalv10009233m.g N 0.737
MDP0000270078 Malus domestica MDP0000270078 N 0.736
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.736
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.736
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.736
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.736
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.736
Pm009748 Prunus mume Pm009748 N 0.736
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N 0.736
MDP0000499190 Malus domestica MDP0000499190 N 0.736
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.735
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.734
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.733
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.733
Bra032635 Brassica rapa Bra032635 N 0.732
Bo8g117860 Brassica oleracea Bo8g117860 N 0.732
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.731
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.730
MDP0000583070 Malus domestica MDP0000583070 N 0.730
TCM_016428 Theobroma cacao TCM_016428 N 0.729
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.728
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.727
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N 0.727
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.724
mgf009009m Mimulus guttatus mgf009009m N 0.722
PK11198.1 Cannabis sativa PK11198.1 N 0.721
cassava11157.m1 Manihot esculenta cassava11157.m1 N 0.721
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N 0.718
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.718
29742.m001447 Ricinus communis 29742.m001447 N 0.717
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.715
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.715
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.715
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.714
TCM_011327 Theobroma cacao TCM_011327 N 0.714
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N 0.714
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N 0.714
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.714
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.714
MDP0000216918 Malus domestica MDP0000216918 N 0.714
TCM_046858 Theobroma cacao TCM_046858 N 0.714
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N 0.714
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.714
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.713
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.713
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.713
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.713
Bo3g022870 Brassica oleracea Bo3g022870 N 0.713
TRY Arabidopsis thaliana AT5G53200 N 0.713
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.713
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.710
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.710
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N 0.706
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.704
PRUPE_ppa024794mg Prunus persica PRUPE_ppa024794mg N 0.703
Gorai.008G172400 Gossypium raimondii Gorai.008G172400 N 0.703
Pm019781 Prunus mume Pm019781 N 0.701
Aquca_028_00182 Aquilegia coerulea Aquca_028_00182 N 0.700
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.699
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N 0.696
GLYMA12G10790 Glycine max GLYMA12G10790 N 0.693
MTR_4g046737 Medicago truncatula MTR_4g046737 N 0.693
GLYMA06G45941 Glycine max GLYMA06G45941 N 0.693
Bo9g110930 Brassica oleracea Bo9g110930 N 0.692
29842.m003644 Ricinus communis 29842.m003644 N 0.688
Bo3g024610 Brassica oleracea Bo3g024610 N 0.687
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.686
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.686
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.686
Cla011563 Citrullus lanatus Cla011563 N 0.685
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.682
cassava4691.m1 Manihot esculenta cassava4691.m1 N 0.682
ETC2 Arabidopsis thaliana AT2G30420 N 0.682
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.681
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.681
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.681
Solyc07g052490.2 Solanum lycopersicum Solyc07g052490.2 N 0.680
Sb03g028170 Sorghum bicolor Sb03g028170 N 0.678
Pavir.J30777 Panicum virgatum Pavir.J30777 N 0.678
GRMZM2G057955 Zea mays GRMZM2G057955 N 0.678
MLOC_68772 Hordeum vulgare MLOC_68772 N 0.678
Pavir.Eb02165 Panicum virgatum Pavir.Eb02165 N 0.678
Carubv10025583m.g Capsella rubella Carubv10025583m.g N 0.678
SapurV1A.0610s0050 Salix purpurea SapurV1A.0610s0050 N 0.677
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.677
Bra026297 Brassica rapa Bra026297 N 0.674
VIT_10s0116g00500 Vitis vinifera VIT_10s0116g00500 N 0.674
MDP0000547418 Malus domestica MDP0000547418 N 0.673
MDP0000718806 Malus domestica MDP0000718806 N 0.673
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.672
Bo4g009260 Brassica oleracea Bo4g009260 N 0.672
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.672
CPC Arabidopsis thaliana AT2G46410 N 0.672
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.672
TCL1 Arabidopsis thaliana AT2G30432 N 0.672
Bo4g197120 Brassica oleracea Bo4g197120 N 0.672
Bo3g039260 Brassica oleracea Bo3g039260 N 0.672
Bra039283 Brassica rapa Bra039283 N 0.672
Bra004539 Brassica rapa Bra004539 N 0.672
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.672
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.672
Traes_3DL_30CF35BB3 Triticum aestivum Traes_3DL_30CF35BB3 N 0.671
TRIUR3_10842 Triticum urartu TRIUR3_10842 N 0.671
TRAES3BF020200120CFD_g Triticum aestivum TRAES3BF020200120CFD_g N 0.671
GSMUA_Achr1G05080_001 Musa acuminata GSMUA_Achr1G05080_001 N 0.671
Thhalv10017480m.g Eutrema salsugineum Thhalv10017480m.g N 0.669
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.669
Bo2g046050 Brassica oleracea Bo2g046050 N 0.668
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N 0.668
Bra022637 Brassica rapa Bra022637 N 0.664
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N 0.664
scaffold_401530.1 Arabidopsis lyrata scaffold_401530.1 N 0.664
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.662
TCM_030163 Theobroma cacao TCM_030163 N 0.661