Carubv10025583m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10025583m.g T286441_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025583m Myb 35 77

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.901
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.901
scaffold_401530.1 Arabidopsis lyrata scaffold_401530.1 N 0.879
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N 0.872
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.829
TCL1 Arabidopsis thaliana AT2G30432 N 0.825
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.825
ETC2 Arabidopsis thaliana AT2G30420 N 0.808
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.799
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.766
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.766
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.766
TCM_005177 Theobroma cacao TCM_005177 N 0.761
MTR_5g009460 Medicago truncatula MTR_5g009460 N 0.761
Ca_15029 Cicer arietinum Ca_15029 N 0.761
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.761
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.761
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.761
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.761
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.761
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.757
TCL2 Arabidopsis lyrata scaffold_401531.1 N 0.756
TCL2 Arabidopsis thaliana AT2G30424 N 0.756
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.752
Thhalv10017480m.g Eutrema salsugineum Thhalv10017480m.g N 0.749
Bostr.24513s0195 Boechera stricta Bostr.24513s0195 N 0.749
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.745
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.745
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.740
MDP0000141474 Malus domestica MDP0000141474 N 0.738
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.738
MDP0000583070 Malus domestica MDP0000583070 N 0.738
Pm018400 Prunus mume Pm018400 N 0.738
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.738
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.734
Bra026297 Brassica rapa Bra026297 N 0.732
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.731
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.731
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.731
Bo3g022870 Brassica oleracea Bo3g022870 N 0.731
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.731
TRY Arabidopsis thaliana AT5G53200 N 0.731
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.731
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.727
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.726
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.725
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.725
TCM_016428 Theobroma cacao TCM_016428 N 0.721
Cla011563 Citrullus lanatus Cla011563 N 0.717
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.716
29742.m001447 Ricinus communis 29742.m001447 N 0.714
Bo9g110930 Brassica oleracea Bo9g110930 N 0.709
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.707
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.707
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.703
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.703
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.696
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.691
Bo3g024610 Brassica oleracea Bo3g024610 N 0.687
Bo2g046050 Brassica oleracea Bo2g046050 N 0.686
Bra022637 Brassica rapa Bra022637 N 0.682
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.678
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.678
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.678
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.678
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.675
ETC3 Arabidopsis thaliana AT4G01060 N 0.671
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.671
Bra008539 Brassica rapa Bra008539 N 0.665
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.665
Bo2g098940 Brassica oleracea Bo2g098940 N 0.665
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.665
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.665
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.665
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.664
CPC Arabidopsis thaliana AT2G46410 N 0.663
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.663
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.663
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.663
Bra004539 Brassica rapa Bra004539 N 0.663
Bo4g197120 Brassica oleracea Bo4g197120 N 0.663
Bra039283 Brassica rapa Bra039283 N 0.663
Bo3g039260 Brassica oleracea Bo3g039260 N 0.663
Bo4g009260 Brassica oleracea Bo4g009260 N 0.663
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.663
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.662